Structural Similarities for the Entities in PDB 4G4S

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A

Description: Proteasome component C7-alpha protein | Length: 252

No structure alignment results are available for 4G4S.A explicitly.

It is represented by chain 5LE5.G which has more than 50% sequence identity.

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Entity #10 | Chains J

Description: Proteasome component PUP3 protein | Length: 205

No structure alignment results are available for 4G4S.J explicitly.

It is represented by chain 5LE5.I which has more than 50% sequence identity.

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Entity #11 | Chains K

Description: Proteasome component C11 protein | Length: 198

No structure alignment results are available for 4G4S.K explicitly.

It is represented by chain 5LE5.J which has more than 40% sequence identity.

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Entity #12 | Chains L

Description: Proteasome component PRE2 protein | Length: 212

No structure alignment results are available for 4G4S.L explicitly.

It is represented by chain 5LE5.K which has more than 70% sequence identity.

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Entity #13 | Chains M

Description: Proteasome component C5 protein | Length: 222

No structure alignment results are available for 4G4S.M explicitly.

It is represented by chain 4R17.L which is 100% sequence identical.

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Entity #14 | Chains N

Description: Proteasome component PRE4 protein | Length: 233

No structure alignment results are available for 4G4S.N explicitly.

It is represented by chain 4R17.M which is 100% sequence identical.

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Entity #15 | Chains O

Description: Proteasome chaperone 1 protein | Length: 276

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Entity #16 | Chains P

Description: Proteasome assembly chaperone 2 protein | Length: 269

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Entity #2 | Chains B

Description: Proteasome component Y7 protein | Length: 250

No structure alignment results are available for 4G4S.B explicitly.

It is represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #3 | Chains C

Description: Proteasome component Y13 protein | Length: 258

No structure alignment results are available for 4G4S.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains D

Description: Proteasome component PRE6 protein | Length: 254

No structure alignment results are available for 4G4S.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #5 | Chains E

Description: Proteasome component PUP2 protein | Length: 261

No structure alignment results are available for 4G4S.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #6 | Chains F

Description: Proteasome component PRE5 protein | Length: 235

No structure alignment results are available for 4G4S.F explicitly.

It is represented by chain 4R17.E which is 100% sequence identical.

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Entity #7 | Chains G

Description: Proteasome component C1 protein | Length: 288

No structure alignment results are available for 4G4S.G explicitly.

It is represented by chain 4R17.F which is 100% sequence identical.

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Entity #8 | Chains H

Description: Proteasome component PRE3 protein | Length: 196

No structure alignment results are available for 4G4S.H explicitly.

It is represented by chain 4R17.N which is 100% sequence identical.

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Entity #9 | Chains I

Description: Proteasome component PUP1 protein | Length: 232

No structure alignment results are available for 4G4S.I explicitly.

It is represented by chain 5LE5.H which has more than 50% sequence identity.

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References