Structural Similarities for the Entities in PDB 4DHJ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,E,I,L

Description: Ubiquitin thioesterase otubain-like protein | Length: 284

No structure alignment results are available for 4DHJ.A, 4DHJ.E, 4DHJ.I, 4DHJ.L explicitly.

These chains are represented by chain 4DHI.B which is 100% sequence identical.

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Entity #2 | Chains B,F,J,M

Description: Ubiquitin aldehyde protein | Length: 76

No structure alignment results are available for 4DHJ.B, 4DHJ.F, 4DHJ.J, 4DHJ.M explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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Entity #3 | Chains D,H

Description: Ubiquitin protein | Length: 76

No structure alignment results are available for 4DHJ.D, 4DHJ.H explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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Entity #4 | Chains C,G,K,N

Description: Ubiquitin-conjugating enzyme E2 N protein | Length: 152

No structure alignment results are available for 4DHJ.C, 4DHJ.G, 4DHJ.K, 4DHJ.N explicitly.

These chains are represented by chain 1Z2U.a which has more than 40% sequence identity.

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References