Structural Similarities for the Entities in PDB 4CH8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,C,E,G

Description: THROMBIN, LIGHT CHAIN protein | Length: 36

No structure alignment results are available for 4CH8.A, 4CH8.C, 4CH8.E, 4CH8.G explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B,D,F,H

Description: THROMBIN, HEAVY CHAIN protein | Length: 259

No structure alignment results are available for 4CH8.B, 4CH8.D, 4CH8.F, 4CH8.H explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains P,Q,R,S

Description: PLATELET GLYCOPROTEIN IB ALPHA CHAIN, RESIDUES 287-300 protein | Length: 14

This entity is too short to be considered for the all vs. all structure alignments.


References