4AQW

Model of human kinesin-5 motor domain (1II6, 3HQD) and mammalian tubulin heterodimer (1JFF) docked into the 9.5-angstrom cryo-EM map of microtubule-bound kinesin-5 motor domain in the rigor state.


Structural Similarities for the Entities in PDB 4AQW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: TUBULIN ALPHA-1D CHAIN protein | Length: 452

No structure alignment results are available for 4AQW.A explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: TUBULIN BETA-2B CHAIN protein | Length: 445

No structure alignment results are available for 4AQW.B explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #3 | Chains C

Description: KINESIN-LIKE PROTEIN KIF11 protein | Length: 373

No structure alignment results are available for 4AQW.C explicitly.

It is represented by chain 1F9V.a which has more than 40% sequence identity.

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References