Structural Similarities for the Entities in PDB 4ADF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D,E,F,M,N,O,P,Q,R

Description: SECRETED PROTEIN BARF1 protein | Length: 208

No structure alignment results are available for 4ADF.A, 4ADF.B, 4ADF.C, 4ADF.D, 4ADF.E, 4ADF.F, 4ADF.M, 4ADF.N, 4ADF.O, 4ADF.P, 4ADF.Q, 4ADF.R explicitly.

These chains are represented by chain 2CH8.A which has more than 95% sequence identity.

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Entity #2 | Chains G,H,I,J,K,L,S,T,U,V,W,X

Description: MACROPHAGE COLONY-STIMULATING FACTOR 1 protein | Length: 153

No structure alignment results are available for 4ADF.G, 4ADF.H, 4ADF.I, 4ADF.J, 4ADF.K, 4ADF.L, 4ADF.S, 4ADF.T, 4ADF.U, 4ADF.V, 4ADF.W, 4ADF.X explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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References