Structural Similarities for the Entities in PDB 487D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains H

Description: PROTEIN (50S L1 RIBOSOMAL PROTEIN) protein | Length: 224

No structure alignment results are available for 487D.H explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

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Entity #2 | Chains I

Description: PROTEIN (50S L2 RIBOSOMAL PROTEIN) protein | Length: 135

No structure alignment results are available for 487D.I explicitly.

It is represented by chain 1RL2.a which is 100% sequence identical.

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Entity #3 | Chains J

Description: PROTEIN (50S L6 RIBOSOMAL PROTEIN) protein | Length: 164

No structure alignment results are available for 487D.J explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains K

Description: PROTEIN (50S L9 RIBOSOMAL PROTEIN) protein | Length: 149

No structure alignment results are available for 487D.K explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #5 | Chains L

Description: PROTEIN (50S L11 RIBOSOMAL PROTEIN) protein | Length: 133

No structure alignment results are available for 487D.L explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #6 | Chains M

Description: PROTEIN (50S L14 RIBOSOMAL PROTEIN) protein | Length: 122

No structure alignment results are available for 487D.M explicitly.

It is represented by chain 1WHI.a which is 100% sequence identical.

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Entity #7 | Chains N

Description: PROTEIN (50S L25 RIBOSOMAL PROTEIN) protein | Length: 94

No structure alignment results are available for 487D.N explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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References