Structural Similarities for the Entities in PDB 3ZNI

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,E,I,M

Description: E3 UBIQUITIN-PROTEIN LIGASE CBL-B protein | Length: 394

No structure alignment results are available for 3ZNI.A, 3ZNI.E, 3ZNI.I, 3ZNI.M explicitly.

These chains are represented by chain 5HKX.A which has more than 70% sequence identity.

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Entity #2 | Chains B,F,J,N

Description: TYROSINE-PROTEIN KINASE ZAP-70 protein | Length: 12

This entity is too short to be considered for the all vs. all structure alignments.


Entity #3 | Chains C,G,K,O

Description: UBIQUITIN-CONJUGATING ENZYME E2 D2 protein | Length: 146

No structure alignment results are available for 3ZNI.C, 3ZNI.G, 3ZNI.K, 3ZNI.O explicitly.

These chains are represented by chain 1Z2U.a which has more than 90% sequence identity.

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Entity #4 | Chains D,H,L,P

Description: POLYUBIQUITIN-C protein | Length: 81

No structure alignment results are available for 3ZNI.D, 3ZNI.H, 3ZNI.L, 3ZNI.P explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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References