Structural Similarities for the Entities in PDB 3WMM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: Photosynthetic reaction center C subunit protein | Length: 404

No structure alignment results are available for 3WMM.C explicitly.

It is represented by chain 1EYS.c which has more than 95% sequence identity.

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Entity #2 | Chains L

Description: Photosynthetic reaction center L subunit protein | Length: 281

No structure alignment results are available for 3WMM.L explicitly.

It is represented by chain 2WJN.L which has more than 50% sequence identity.

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Entity #3 | Chains M

Description: Photosynthetic reaction center M subunit protein | Length: 325

No structure alignment results are available for 3WMM.M explicitly.

It is represented by chain 2WJN.M which has more than 50% sequence identity.

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Entity #4 | Chains H

Description: Photosynthetic reaction center H subunit protein | Length: 259

No structure alignment results are available for 3WMM.H explicitly.

It is represented by chain 2WJN.H which has more than 40% sequence identity.

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Entity #5 | Chains 1,3,5,7,9,A,D,F,I,K,O,Q,S,U,W,Y

Description: LH1 alpha polypeptide protein | Length: 61

No structure alignment results are available for 3WMM.1, 3WMM.3, 3WMM.5, 3WMM.7, 3WMM.9, 3WMM.A, 3WMM.D, 3WMM.F, 3WMM.I, 3WMM.K, 3WMM.O, 3WMM.Q, 3WMM.S, 3WMM.U, 3WMM.W, 3WMM.Y explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains 0,2,4,6,8,B,E,G,J,N,P,R,T,V,X,Z

Description: LH1 beta polypeptide protein | Length: 47

No structure alignment results are available for 3WMM.0, 3WMM.2, 3WMM.4, 3WMM.6, 3WMM.8, 3WMM.B, 3WMM.E, 3WMM.G, 3WMM.J, 3WMM.N, 3WMM.P, 3WMM.R, 3WMM.T, 3WMM.V, 3WMM.X, 3WMM.Z explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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References