Structural Similarities for the Entities in PDB 3OAA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,I,J,K,Q,R,S,Y,Z,a

Description: ATP synthase subunit alpha protein | Length: 513

No structure alignment results are available for 3OAA.A, 3OAA.B, 3OAA.C, 3OAA.I, 3OAA.J, 3OAA.K, 3OAA.Q, 3OAA.R, 3OAA.S, 3OAA.Y, 3OAA.Z, 3OAA.a explicitly.

These chains are represented by chain 2JDI.a which has more than 50% sequence identity.

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Entity #2 | Chains D,E,F,L,M,N,T,U,V,b,c,d

Description: ATP synthase subunit beta protein | Length: 459

No structure alignment results are available for 3OAA.D, 3OAA.E, 3OAA.F, 3OAA.L, 3OAA.M, 3OAA.N, 3OAA.T, 3OAA.U, 3OAA.V, 3OAA.b, 3OAA.c, 3OAA.d explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains G,O,W,e

Description: ATP synthase gamma chain protein | Length: 286

No structure alignment results are available for 3OAA.G, 3OAA.O, 3OAA.W, 3OAA.e explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains H,P,X,f

Description: ATP synthase epsilon chain protein | Length: 138

No structure alignment results are available for 3OAA.H, 3OAA.P, 3OAA.X, 3OAA.f explicitly.

These chains are represented by chain 1FS0.e which is 100% sequence identical.

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References