Structural Similarities for the Entities in PDB 3NIG

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C

Description: Integrin alpha-IIb protein | Length: 457

No structure alignment results are available for 3NIG.A, 3NIG.C explicitly.

These chains are represented by chain 4WK0.A which has more than 40% sequence identity.

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Entity #2 | Chains B,D

Description: Integrin beta-3 protein | Length: 471

No structure alignment results are available for 3NIG.B, 3NIG.D explicitly.

These chains are represented by chain 4WK0.B which has more than 40% sequence identity.

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Entity #3 | Chains E,H

Description: Monoclonal antibody 10E5 heavy chain protein | Length: 221

No structure alignment results are available for 3NIG.E, 3NIG.H explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #4 | Chains F,L

Description: Monoclonal antibody 10E5 light chain protein | Length: 214

No structure alignment results are available for 3NIG.F, 3NIG.L explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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References