Structural Similarities for the Entities in PDB 3JVZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: Ubiquitin-conjugating enzyme E2 D2 protein | Length: 146

No structure alignment results are available for 3JVZ.A, 3JVZ.B explicitly.

These chains are represented by chain 1Z2U.a which has more than 90% sequence identity.

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Entity #2 | Chains C,D

Description: E3 ubiquitin-protein ligase NEDD4-like protein | Length: 385

No structure alignment results are available for 3JVZ.C, 3JVZ.D explicitly.

These chains are represented by chain 3H1D.A which has more than 40% sequence identity.

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Entity #3 | Chains X,Y

Description: Ubiquitin protein | Length: 81

No structure alignment results are available for 3JVZ.X, 3JVZ.Y explicitly.

These chains are represented by chain 5TOG.A which has more than 70% sequence identity.

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References