Structural Similarities for the Entities in PDB 3JBT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,K,M

Description: Apoptotic protease-activating factor 1 protein | Length: 1260

No structure alignment results are available for 3JBT.A, 3JBT.C, 3JBT.E, 3JBT.G, 3JBT.I, 3JBT.K, 3JBT.M explicitly.

These chains are represented by chain 3SFZ.A which has more than 70% sequence identity.

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Entity #2 | Chains B,D,F,H,J,L,N

Description: Cytochrome c protein | Length: 105

No structure alignment results are available for 3JBT.B, 3JBT.D, 3JBT.F, 3JBT.H, 3JBT.J, 3JBT.L, 3JBT.N explicitly.

These chains are represented by chain 4N0K.A which has more than 50% sequence identity.

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References