Structural Similarities for the Entities in PDB 3J7P

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 5

Description: 28S ribosomal RNA rna | Length: 3664

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains G

Description: Ribosomal protein eL8 protein | Length: 266

No structure alignment results are available for 3J7P.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains H

Description: Ribosomal protein uL6 protein | Length: 192

No structure alignment results are available for 3J7P.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #12 | Chains I

Description: Ribosomal protein uL16 protein | Length: 213

No structure alignment results are available for 3J7P.I explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #13 | Chains J

Description: Ribosomal protein uL5 protein | Length: 178

No structure alignment results are available for 3J7P.J explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #14 | Chains K

Description: Ribosomal protein uL11 protein | Length: 163

No structure alignment results are available for 3J7P.K explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #15 | Chains L

Description: Ribosomal protein eL13 protein | Length: 211

No structure alignment results are available for 3J7P.L explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #16 | Chains M

Description: Ribosomal protein eL14 protein | Length: 213

No structure alignment results are available for 3J7P.M explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #17 | Chains N

Description: Ribosomal protein eL15 protein | Length: 204

No structure alignment results are available for 3J7P.N explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #18 | Chains O

Description: Ribosomal protein uL13 protein | Length: 204

No structure alignment results are available for 3J7P.O explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains P

Description: Ribosomal protein uL22 protein | Length: 153

No structure alignment results are available for 3J7P.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains 7

Description: 5S ribosomal RNA rna | Length: 120

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains Q

Description: Ribosomal protein eL18 protein | Length: 188

No structure alignment results are available for 3J7P.Q explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #21 | Chains R

Description: Ribosomal protein eL19 protein | Length: 196

No structure alignment results are available for 3J7P.R explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #22 | Chains S

Description: Ribosomal protein eL20 protein | Length: 224

No structure alignment results are available for 3J7P.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains T

Description: Ribosomal protein eL21 protein | Length: 160

No structure alignment results are available for 3J7P.T explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #24 | Chains U

Description: Ribosomal protein eL22 protein | Length: 128

No structure alignment results are available for 3J7P.U explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #25 | Chains V

Description: Ribosomal protein uL14 protein | Length: 140

No structure alignment results are available for 3J7P.V explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #26 | Chains W

Description: Ribosomal protein eL24 protein | Length: 157

No structure alignment results are available for 3J7P.W explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #27 | Chains X

Description: Ribosomal protein uL23 protein | Length: 156

No structure alignment results are available for 3J7P.X explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #28 | Chains Y

Description: Ribosomal protein uL24 protein | Length: 145

No structure alignment results are available for 3J7P.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #29 | Chains Z

Description: Ribosomal protein eL27 protein | Length: 136

No structure alignment results are available for 3J7P.Z explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains 8

Description: 5.8S ribosomal RNA rna | Length: 156

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains a

Description: Ribosomal protein uL15 protein | Length: 148

No structure alignment results are available for 3J7P.a explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #31 | Chains b

Description: Ribosomal protein eL29 protein | Length: 160

No structure alignment results are available for 3J7P.b explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #32 | Chains c

Description: Ribosomal protein eL30 protein | Length: 115

No structure alignment results are available for 3J7P.c explicitly.

It is represented by chain 3VI6.A which is 100% sequence identical.

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Entity #33 | Chains d

Description: Ribosomal protein eL31 protein | Length: 125

No structure alignment results are available for 3J7P.d explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #34 | Chains e

Description: Ribosomal protein eL32 protein | Length: 135

No structure alignment results are available for 3J7P.e explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #35 | Chains f

Description: Ribosomal protein eL33 protein | Length: 110

No structure alignment results are available for 3J7P.f explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #36 | Chains g

Description: Ribosomal protein eL34 protein | Length: 117

No structure alignment results are available for 3J7P.g explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #37 | Chains h

Description: Ribosomal protein uL29 protein | Length: 123

No structure alignment results are available for 3J7P.h explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains i

Description: Ribosomal protein eL36 protein | Length: 105

No structure alignment results are available for 3J7P.i explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #39 | Chains j

Description: Ribosomal protein eL37 protein | Length: 86

No structure alignment results are available for 3J7P.j explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains A

Description: Ribosomal protein uL2 protein | Length: 257

No structure alignment results are available for 3J7P.A explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #40 | Chains k

Description: Ribosomal protein eL38 protein | Length: 70

No structure alignment results are available for 3J7P.k explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains l

Description: Ribosomal protein eL39 protein | Length: 51

No structure alignment results are available for 3J7P.l explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #42 | Chains m

Description: Ribosomal protein eL40 protein | Length: 128

No structure alignment results are available for 3J7P.m explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #43 | Chains n

Description: Ribosomal protein eL41 protein | Length: 25

No structure alignment results are available for 3J7P.n explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #44 | Chains o

Description: Ribosomal protein eL42 protein | Length: 106

No structure alignment results are available for 3J7P.o explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #45 | Chains p

Description: Ribosomal protein eL43 protein | Length: 91

No structure alignment results are available for 3J7P.p explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #46 | Chains q

Description: Ribosomal protein uL10 protein | Length: 202

No structure alignment results are available for 3J7P.q explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #47 | Chains r

Description: Ribosomal protein eL28 protein | Length: 125

No structure alignment results are available for 3J7P.r explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #48 | Chains 4

Description: Eukaryotic elongation factor 2 protein | Length: 856

No structure alignment results are available for 3J7P.4 explicitly.

It is represented by chain 1N0U.a which has more than 50% sequence identity.

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Entity #49 | Chains S2

Description: 18S ribosomal RNA rna | Length: 1742

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains B

Description: Ribosomal protein uL3 protein | Length: 394

No structure alignment results are available for 3J7P.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #50 | Chains SA

Description: Ribosomal protein uS2 protein | Length: 295

No structure alignment results are available for 3J7P.SA explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #51 | Chains SB

Description: Ribosomal protein eS1 protein | Length: 264

No structure alignment results are available for 3J7P.SB explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #52 | Chains SC

Description: Ribosomal protein uS5 protein | Length: 218

No structure alignment results are available for 3J7P.SC explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #53 | Chains SD

Description: Ribosomal protein uS3 protein | Length: 243

No structure alignment results are available for 3J7P.SD explicitly.

It is represented by chain 4BSZ.A which has more than 50% sequence identity.

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Entity #54 | Chains SE

Description: Ribosomal protein eS4 protein | Length: 263

No structure alignment results are available for 3J7P.SE explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #55 | Chains SF

Description: Ribosomal protein uS7 protein | Length: 204

No structure alignment results are available for 3J7P.SF explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #56 | Chains SG

Description: Ribosomal protein eS6 protein | Length: 249

No structure alignment results are available for 3J7P.SG explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #57 | Chains SH

Description: Ribosomal protein eS7 protein | Length: 194

No structure alignment results are available for 3J7P.SH explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #58 | Chains SI

Description: Ribosomal protein eS8 protein | Length: 208

No structure alignment results are available for 3J7P.SI explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #59 | Chains SJ

Description: Ribosomal protein uS4 protein | Length: 194

No structure alignment results are available for 3J7P.SJ explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains C

Description: Ribosomal protein uL4 protein | Length: 367

No structure alignment results are available for 3J7P.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #60 | Chains SK

Description: Ribosomal protein eS10 protein | Length: 165

No structure alignment results are available for 3J7P.SK explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #61 | Chains SL

Description: Ribosomal protein uS17 protein | Length: 158

No structure alignment results are available for 3J7P.SL explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #62 | Chains SM

Description: Ribosomal protein eS12 protein | Length: 124

No structure alignment results are available for 3J7P.SM explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #63 | Chains SN

Description: Ribosomal protein uS15 protein | Length: 151

No structure alignment results are available for 3J7P.SN explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #64 | Chains SO

Description: Ribosomal protein uS11 protein | Length: 151

No structure alignment results are available for 3J7P.SO explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #65 | Chains SP

Description: Ribosomal protein uS19 protein | Length: 145

No structure alignment results are available for 3J7P.SP explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #66 | Chains SQ

Description: Ribosomal protein uS9 protein | Length: 146

No structure alignment results are available for 3J7P.SQ explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #67 | Chains SR

Description: Ribosomal protein eS17 protein | Length: 135

No structure alignment results are available for 3J7P.SR explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #68 | Chains SS

Description: Ribosomal protein uS13 protein | Length: 152

No structure alignment results are available for 3J7P.SS explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #69 | Chains ST

Description: Ribosomal protein eS19 protein | Length: 145

No structure alignment results are available for 3J7P.ST explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains D

Description: Ribosomal protein uL18 protein | Length: 297

No structure alignment results are available for 3J7P.D explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #70 | Chains SU

Description: Ribosomal protein uS10 protein | Length: 119

No structure alignment results are available for 3J7P.SU explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #71 | Chains SV

Description: Ribosomal protein eS21 protein | Length: 83

No structure alignment results are available for 3J7P.SV explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #72 | Chains SW

Description: Ribosomal protein uS8 protein | Length: 130

No structure alignment results are available for 3J7P.SW explicitly.

It is represented by chain 1I6U.a which has more than 50% sequence identity.

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Entity #73 | Chains SX

Description: Ribosomal protein uS12 protein | Length: 143

No structure alignment results are available for 3J7P.SX explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #74 | Chains SY

Description: Ribosomal protein eS24 protein | Length: 132

No structure alignment results are available for 3J7P.SY explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #75 | Chains SZ

Description: Ribosomal protein es25 protein | Length: 125

No structure alignment results are available for 3J7P.SZ explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #76 | Chains Sa

Description: Ribosomal protein eS26 protein | Length: 115

No structure alignment results are available for 3J7P.Sa explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #77 | Chains Sb

Description: Ribosomal protein eS27 protein | Length: 84

No structure alignment results are available for 3J7P.Sb explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #78 | Chains Sc

Description: Ribosomal protein eS28 protein | Length: 69

No structure alignment results are available for 3J7P.Sc explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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