3J78

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)


Structural Similarities for the Entities in PDB 3J78

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains L1

Description: 60S ribosomal protein L1 protein | Length: 217

No structure alignment results are available for 3J78.L1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains 60

Description: 60S ribosomal protein L10 protein | Length: 221

No structure alignment results are available for 3J78.60 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains 61

Description: 60S ribosomal protein L11 protein | Length: 174

No structure alignment results are available for 3J78.61 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #12 | Chains 62

Description: 60S ribosomal protein L12 protein | Length: 165

No structure alignment results are available for 3J78.62 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains 63

Description: 60S ribosomal protein L13 protein | Length: 199

No structure alignment results are available for 3J78.63 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #14 | Chains 64

Description: 60S ribosomal protein L14 protein | Length: 138

No structure alignment results are available for 3J78.64 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #15 | Chains 65

Description: 60S ribosomal protein L15 protein | Length: 204

No structure alignment results are available for 3J78.65 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains 66

Description: 60S ribosomal protein L16 protein | Length: 199

No structure alignment results are available for 3J78.66 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains 67

Description: 60S ribosomal protein L17 protein | Length: 184

No structure alignment results are available for 3J78.67 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #18 | Chains 68

Description: 60S ribosomal protein L18 protein | Length: 186

No structure alignment results are available for 3J78.68 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains 69

Description: 60S ribosomal protein L19 protein | Length: 189

No structure alignment results are available for 3J78.69 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains L2

Description: 60S ribosomal protein L2 protein | Length: 254

No structure alignment results are available for 3J78.L2 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #20 | Chains 70

Description: 60S ribosomal protein L20 protein | Length: 172

No structure alignment results are available for 3J78.70 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains 71

Description: 60S ribosomal protein L21 protein | Length: 160

No structure alignment results are available for 3J78.71 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #22 | Chains 72

Description: 60S ribosomal protein L22 protein | Length: 121

No structure alignment results are available for 3J78.72 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains 73

Description: 60S ribosomal protein L23 protein | Length: 137

No structure alignment results are available for 3J78.73 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains 74

Description: 60S ribosomal protein L24 protein | Length: 155

No structure alignment results are available for 3J78.74 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains 75

Description: 60S ribosomal protein L25 protein | Length: 142

No structure alignment results are available for 3J78.75 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains 76

Description: 60S ribosomal protein L26 protein | Length: 127

No structure alignment results are available for 3J78.76 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains 77

Description: 60S ribosomal protein L27 protein | Length: 136

No structure alignment results are available for 3J78.77 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #28 | Chains 78

Description: 60S ribosomal protein L28 protein | Length: 149

No structure alignment results are available for 3J78.78 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains 79

Description: 60S ribosomal protein L29 protein | Length: 59

No structure alignment results are available for 3J78.79 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains L3

Description: 60S ribosomal protein L3 protein | Length: 387

No structure alignment results are available for 3J78.L3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains 80

Description: 60S ribosomal protein L30 protein | Length: 105

No structure alignment results are available for 3J78.80 explicitly.

It is represented by chain 3VI6.A which has more than 50% sequence identity.

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Entity #31 | Chains 81

Description: 60S ribosomal protein L31 protein | Length: 113

No structure alignment results are available for 3J78.81 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains 82

Description: 60S ribosomal protein L32 protein | Length: 130

No structure alignment results are available for 3J78.82 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains 83

Description: 60S ribosomal protein L33 protein | Length: 107

No structure alignment results are available for 3J78.83 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #34 | Chains 84

Description: 60S ribosomal protein L34 protein | Length: 121

No structure alignment results are available for 3J78.84 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #35 | Chains 85

Description: 60S ribosomal protein L35 protein | Length: 120

No structure alignment results are available for 3J78.85 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #36 | Chains 86

Description: 60S ribosomal protein L36 protein | Length: 100

No structure alignment results are available for 3J78.86 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains 87

Description: 60S ribosomal protein L37 protein | Length: 88

No structure alignment results are available for 3J78.87 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #38 | Chains 88

Description: 60S ribosomal protein L38 protein | Length: 78

No structure alignment results are available for 3J78.88 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains 89

Description: 60S ribosomal protein L39 protein | Length: 51

No structure alignment results are available for 3J78.89 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains L4

Description: 60S ribosomal protein L4 protein | Length: 362

No structure alignment results are available for 3J78.L4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #40 | Chains 90

Description: 60S ribosomal protein L40 protein | Length: 128

No structure alignment results are available for 3J78.90 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #41 | Chains 91

Description: 60S ribosomal protein L41 protein | Length: 25

No structure alignment results are available for 3J78.91 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains 92

Description: 60S ribosomal protein L42 protein | Length: 106

No structure alignment results are available for 3J78.92 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains 93

Description: 60S ribosomal protein L43 protein | Length: 92

No structure alignment results are available for 3J78.93 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #44 | Chains P0

Description: 60S acidic ribosomal protein P0 protein | Length: 312

No structure alignment results are available for 3J78.P0 explicitly.

It is represented by chain XXXX.null which has more than 90% sequence identity.

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Entity #45 | Chains RC

Description: Guanine nucleotide-binding protein subunit beta-like protein protein | Length: 319

No structure alignment results are available for 3J78.RC explicitly.

It is represented by chain 3FRX.A which is 100% sequence identical.

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Entity #46 | Chains S0

Description: 40S ribosomal protein S0 protein | Length: 252

No structure alignment results are available for 3J78.S0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #47 | Chains S1

Description: 40S ribosomal protein S1 protein | Length: 255

No structure alignment results are available for 3J78.S1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #48 | Chains S2

Description: 40S ribosomal protein S2 protein | Length: 254

No structure alignment results are available for 3J78.S2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #49 | Chains S3

Description: 40S ribosomal protein S3 protein | Length: 240

No structure alignment results are available for 3J78.S3 explicitly.

It is represented by chain 4BSZ.A which is 100% sequence identical.

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Entity #5 | Chains L5

Description: 60S ribosomal protein L5 protein | Length: 297

No structure alignment results are available for 3J78.L5 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #50 | Chains S4

Description: 40S ribosomal protein S4 protein | Length: 261

No structure alignment results are available for 3J78.S4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #51 | Chains S5

Description: 40S ribosomal protein S5 protein | Length: 225

No structure alignment results are available for 3J78.S5 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #52 | Chains S6

Description: 40S ribosomal protein S6 protein | Length: 236

No structure alignment results are available for 3J78.S6 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #53 | Chains S7

Description: 40S ribosomal protein S7 protein | Length: 190

No structure alignment results are available for 3J78.S7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #54 | Chains S8

Description: 40S ribosomal protein S8 protein | Length: 200

No structure alignment results are available for 3J78.S8 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #55 | Chains S9

Description: 40S ribosomal protein S9 protein | Length: 197

No structure alignment results are available for 3J78.S9 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #56 | Chains 10

Description: 40S ribosomal protein S10 protein | Length: 105

No structure alignment results are available for 3J78.10 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #57 | Chains 11

Description: 40S ribosomal protein S11 protein | Length: 156

No structure alignment results are available for 3J78.11 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #58 | Chains 12

Description: 40S ribosomal protein S12 protein | Length: 143

No structure alignment results are available for 3J78.12 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #59 | Chains 13

Description: 40S ribosomal protein S13 protein | Length: 151

No structure alignment results are available for 3J78.13 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains L6

Description: 60S ribosomal protein L6 protein | Length: 176

No structure alignment results are available for 3J78.L6 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #60 | Chains 14

Description: 40S ribosomal protein S14 protein | Length: 137

No structure alignment results are available for 3J78.14 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #61 | Chains 15

Description: 40S ribosomal protein S15 protein | Length: 142

No structure alignment results are available for 3J78.15 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #62 | Chains 16

Description: 40S ribosomal protein S16 protein | Length: 143

No structure alignment results are available for 3J78.16 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #63 | Chains 17

Description: 40S ribosomal protein S17 protein | Length: 136

No structure alignment results are available for 3J78.17 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #64 | Chains 18

Description: 40S ribosomal protein S18 protein | Length: 146

No structure alignment results are available for 3J78.18 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #65 | Chains 19

Description: 40S ribosomal protein S19 protein | Length: 144

No structure alignment results are available for 3J78.19 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #66 | Chains 20

Description: 40S ribosomal protein S20 protein | Length: 121

No structure alignment results are available for 3J78.20 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #67 | Chains 21

Description: 40S ribosomal protein S21 protein | Length: 87

No structure alignment results are available for 3J78.21 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #68 | Chains 22

Description: 40S ribosomal protein S22 protein | Length: 130

No structure alignment results are available for 3J78.22 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #69 | Chains 23

Description: 40S ribosomal protein S23 protein | Length: 145

No structure alignment results are available for 3J78.23 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains L7

Description: 60S ribosomal protein L7 protein | Length: 244

No structure alignment results are available for 3J78.L7 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #70 | Chains 24

Description: 40S ribosomal protein S24 protein | Length: 135

No structure alignment results are available for 3J78.24 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #71 | Chains 25

Description: 40S ribosomal protein S25 protein | Length: 108

No structure alignment results are available for 3J78.25 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #72 | Chains 26

Description: 40S ribosomal protein S26 protein | Length: 119

No structure alignment results are available for 3J78.26 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #73 | Chains 27

Description: 40S ribosomal protein S27 protein | Length: 82

No structure alignment results are available for 3J78.27 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #74 | Chains 28

Description: 40S ribosomal protein S28 protein | Length: 67

No structure alignment results are available for 3J78.28 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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