Structural Similarities for the Entities in PDB 3J6E

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,K,M,O,Q

Description: Tubulin alpha-1A chain protein | Length: 439

No structure alignment results are available for 3J6E.A, 3J6E.C, 3J6E.E, 3J6E.G, 3J6E.I, 3J6E.K, 3J6E.M, 3J6E.O, 3J6E.Q explicitly.

These chains are represented by chain 5IYZ.A which has more than 95% sequence identity.

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Entity #2 | Chains B,D,F,H,J,L,N,P,R

Description: Tubulin beta chain protein | Length: 427

No structure alignment results are available for 3J6E.B, 3J6E.D, 3J6E.F, 3J6E.H, 3J6E.J, 3J6E.L, 3J6E.N, 3J6E.P, 3J6E.R explicitly.

These chains are represented by chain 5IYZ.A which has more than 50% sequence identity.

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References