Structural Similarities for the Entities in PDB 3J0L

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing ALL results. Show only significant results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains a

Description: 40S ribosomal RNA fragment rna | Length: 48

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains h

Description: 40S ribosomal RNA fragment rna | Length: 111

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #11 | Chains T

Description: Ribosomal protein S5 protein | Length: 192

No structure alignment results are available for 3J0L.T explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 3J0L.T compares with the representative chain xxxx. Select a comparison method:


Entity #12 | Chains K

Description: Ribosomal protein S14 protein | Length: 140

No structure alignment results are available for 3J0L.K explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 3J0L.K compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains L

Description: Ribosomal protein S23 protein | Length: 141

No structure alignment results are available for 3J0L.L explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 3J0L.L compares with the representative chain xxxx. Select a comparison method:


Entity #14 | Chains X

Description: Ribosomal protein S30 protein | Length: 68

No structure alignment results are available for 3J0L.X explicitly.

It is represented by chain 3J0Q.X which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 3J0L.X compares with the representative chain PDP:3J0QX_. Select a comparison method:


Entity #15 | Chains S

Description: Ribosomal protein S15 protein | Length: 125

No structure alignment results are available for 3J0L.S explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 3J0L.S compares with the representative chain xxxx. Select a comparison method:


Entity #16 | Chains 1

Description: 60S ribosomal RNA fragment rna | Length: 50

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #17 | Chains 2

Description: 60S ribosomal RNA fragment rna | Length: 112

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #18 | Chains 3

Description: 60S ribosomal RNA fragment rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #19 | Chains 4

Description: 60S ribosomal RNA fragment rna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains b

Description: 40S ribosomal RNA fragment rna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains 5

Description: 60S ribosomal RNA fragment rna | Length: 6

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #21 | Chains 6

Description: 60S ribosomal RNA fragment rna | Length: 19

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #22 | Chains 7

Description: 60S ribosomal RNA fragment rna | Length: 50

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #23 | Chains 8

Description: 60S ribosomal RNA fragment rna | Length: 20

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #24 | Chains B

Description: Ribosomal protein L10a protein | Length: 213

No structure alignment results are available for 3J0L.B explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 3J0L.B compares with the representative chain xxxx. Select a comparison method:


Entity #25 | Chains J

Description: Ribosomal protein L10 protein | Length: 219

No structure alignment results are available for 3J0L.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 3J0L.J compares with the representative chain xxxx. Select a comparison method:


Entity #26 | Chains F

Description: Ribosomal protein L36a protein | Length: 95

No structure alignment results are available for 3J0L.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 3J0L.F compares with the representative chain xxxx. Select a comparison method:


Entity #27 | Chains V,W,Y

Description: tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #28 | Chains v,y

Description: mRNA fragment rna | Length: 3

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #29 | Chains w

Description: mRNA fragment rna | Length: 2

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains c

Description: 40S ribosomal RNA fragment rna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains d

Description: 40S ribosomal RNA fragment rna | Length: 7

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains e

Description: 40S ribosomal RNA fragment rna | Length: 4

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains E

Description: 40S ribosomal RNA fragment rna | Length: 5

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains f

Description: 40S ribosomal RNA fragment rna | Length: 21

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #8 | Chains g

Description: 40S ribosomal RNA fragment rna | Length: 31

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #9 | Chains G

Description: 40S ribosomal RNA fragment rna | Length: 13

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References