Structural Similarities for the Entities in PDB 3IPM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G

Description: Proteasome subunit alpha protein | Length: 233

No structure alignment results are available for 3IPM.A, 3IPM.B, 3IPM.C, 3IPM.D, 3IPM.E, 3IPM.F, 3IPM.G explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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View how chain 3IPM.G compares with the representative chain PDP:5LE5Aa. Select a comparison method:


Entity #2 | Chains H,I,J,K,L,M,N

Description: Proteasome subunit beta protein | Length: 217

No structure alignment results are available for 3IPM.H, 3IPM.I, 3IPM.J, 3IPM.K, 3IPM.L, 3IPM.M, 3IPM.N explicitly.

These chains are represented by chain 1YAR.h which is 100% sequence identical.

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View how chain 3IPM.N compares with the representative chain d1yarh1. Select a comparison method:


Entity #3 | Chains O,P,Q,R,S,T,U

Description: Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein protein | Length: 239

No structure alignment results are available for 3IPM.O, 3IPM.P, 3IPM.Q, 3IPM.R, 3IPM.S, 3IPM.T, 3IPM.U explicitly.

These chains are represented by chain 1YAR.o which has more than 95% sequence identity.

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View how chain 3IPM.U compares with the representative chain d1yaro1. Select a comparison method:


References