Structural Similarities for the Entities in PDB 3GHG

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,D,G,J

Description: Fibrinogen alpha chain protein | Length: 562

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Entity #2 | Chains B,E,H,K

Description: Fibrinogen beta chain protein | Length: 461

No structure alignment results are available for 3GHG.B, 3GHG.E, 3GHG.H, 3GHG.K explicitly.

These chains are represented by chain 1M1J.b which has more than 50% sequence identity.

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View how chain 3GHG.K compares with the representative chain d1m1jb1. Select a comparison method:


Entity #3 | Chains C,F,I,L

Description: Fibrinogen gamma chain protein | Length: 411

No structure alignment results are available for 3GHG.C, 3GHG.F, 3GHG.I, 3GHG.L explicitly.

These chains are represented by chain 1M1J.c which has more than 50% sequence identity.

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View how chain 3GHG.L compares with the representative chain d1m1jc1. Select a comparison method:


Entity #4 | Chains M,N,Q,R

Description: A knob protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.


Entity #5 | Chains O,P,S,T

Description: B knob protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.


References