Structural Similarities for the Entities in PDB 3EQ4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains X

Description: Elongation factor Tu protein | Length: 393

No structure alignment results are available for 3EQ4.X explicitly.

It is represented by chain 2C78.a which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 3EQ4.X compares with the representative chain d2c78a1. Select a comparison method:


Entity #2 | Chains L

Description: 30S ribosomal protein S12 protein | Length: 123

No structure alignment results are available for 3EQ4.L explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 3EQ4.L compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains I

Description: 50S ribosomal protein L11 protein | Length: 141

No structure alignment results are available for 3EQ4.I explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 3EQ4.I compares with the representative chain d3egvb1. Select a comparison method:


Entity #4 | Chains Y

Description: tRNA rna | Length: 85

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #5 | Chains A

Description: Fragment h18 of the 16S rRNA rna | Length: 9

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains C

Description: Fragment h44 of the 16S rRNA rna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #7 | Chains B

Description: Fragment H43-44 of the 23S rRNA rna | Length: 48

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #8 | Chains D

Description: Fragment H95 of the 23S rRNA rna | Length: 28

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #9 | Chains E

Description: Fragment H69 of the 23S rRNA rna | Length: 17

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References