HIV-1 capsid C-terminal domain mutant (E187A) in complex with an inhibitor of particle assembly (CAI)

Structural Similarities for the Entities in PDB 3DS1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: HIV-1 CAPSID PROTEIN protein | Length: 86

No structure alignment results are available for 3DS1.A explicitly.

It is represented by chain 3DS4.A which has more than 95% sequence identity.

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View how chain 3DS1.A compares with the representative chain PDP:3DS4Aa. Select a comparison method:

Entity #2 | Chains T

Description: Peptide Inhibitor of capsid assembly protein | Length: 12

This entity is too short to be considered for the all vs. all structure alignments.