Structural Similarities for the Entities in PDB 3DPO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

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Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: Chaperone protein dnaK protein | Length: 219

No structure alignment results are available for 3DPO.A, 3DPO.B explicitly.

These chains are represented by chain 4F01.A which is 100% sequence identical.

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View how chain 3DPO.B compares with the representative chain PDP:4F01Aa. Select a comparison method:

Entity #2 | Chains C,D

Description: inhibitor peptide protein | Length: 11

This entity is too short to be considered for the all vs. all structure alignments.