Structural Similarities for the Entities in PDB 3CX5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,L

Description: Cytochrome b-c1 complex subunit 1, mitochondrial protein | Length: 431

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Entity #10 | Chains J,U

Description: HEAVY CHAIN (VH) OF FV-FRAGMENT protein | Length: 127

No structure alignment results are available for 3CX5.J, 3CX5.U explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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View how chain 3CX5.U compares with the representative chain xxxx. Select a comparison method:


Entity #11 | Chains K,V

Description: LIGHT CHAIN (VL) OF FV-FRAGMENT protein | Length: 107

No structure alignment results are available for 3CX5.K, 3CX5.V explicitly.

These chains are represented by chain 4UNU.A which has more than 50% sequence identity.

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View how chain 3CX5.V compares with the representative chain PDP:4UNUAa. Select a comparison method:


Entity #12 | Chains W

Description: Cytochrome c iso-1 protein | Length: 108

No structure alignment results are available for 3CX5.W explicitly.

It is represented by chain 4N0K.A which has more than 95% sequence identity.

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View how chain 3CX5.W compares with the representative chain PDP:4N0KAa. Select a comparison method:


Entity #2 | Chains B,M

Description: Cytochrome b-c1 complex subunit 2, mitochondrial protein | Length: 352

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Entity #3 | Chains C,N

Description: CYTOCHROME B protein | Length: 385

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Entity #4 | Chains D,O

Description: Cytochrome c1, heme protein, mitochondrial protein | Length: 248

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Entity #5 | Chains E,P

Description: Cytochrome b-c1 complex subunit Rieske, mitochondrial protein | Length: 185

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Entity #6 | Chains F,Q

Description: Cytochrome b-c1 complex subunit 6 protein | Length: 146

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Entity #7 | Chains G,R

Description: Cytochrome b-c1 complex subunit 7 protein | Length: 126

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Entity #8 | Chains H,S

Description: Cytochrome b-c1 complex subunit 8 protein | Length: 93

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Entity #9 | Chains I,T

Description: Cytochrome b-c1 complex subunit 9 protein | Length: 65

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References