Structural Similarities for the Entities in PDB 3AVM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: Integrase protein | Length: 183

No structure alignment results are available for 3AVM.A, 3AVM.B explicitly.

These chains are represented by chain 3L3U.A which has more than 95% sequence identity.

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View how chain 3AVM.B compares with the representative chain PDP:3L3UAa. Select a comparison method:

Entity #2 | Chains D,F

Description: LEDGF peptide protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.