Crystal structures of novel allosteric peptide inhibitors of HIV integrase in the LEDGF binding site

Structural Similarities for the Entities in PDB 3AVC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: Integrase protein | Length: 183

No structure alignment results are available for 3AVC.A, 3AVC.B explicitly.

These chains are represented by chain 3L3U.A which has more than 95% sequence identity.

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View how chain 3AVC.B compares with the representative chain PDP:3L3UAa. Select a comparison method:

Entity #2 | Chains D,F

Description: LEDGF peptide protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.