Structural Similarities for the Entities in PDB 2XQY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,E

Description: ENVELOPE GLYCOPROTEIN H protein | Length: 572

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Entity #2 | Chains G,J

Description: A13-D6.3 MONOCLONAL ANTIBODY protein | Length: 261

No structure alignment results are available for 2XQY.G, 2XQY.J explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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View how chain 2XQY.J compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains K,L

Description: A13-D6.3 MONOCLONAL ANTIBODY protein | Length: 220

No structure alignment results are available for 2XQY.K, 2XQY.L explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 2XQY.L compares with the representative chain PDP:4NZULa. Select a comparison method:


References