Coupling of receptor conformation and ligand orientation determine graded activity.

Bruning, J.B; Parent, A.A; Gil, G; Zhao, M; Nowak, J; Pace, M.C; Smith, C.L; Afonine, P.V; Adams, P.D; Katzenellenbogen, J.A; Nettles, K.W.

Structural Similarities for the Entities in PDB 2QZO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing ALL results. Show only significant results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: Estrogen receptor protein | Length: 258

No structure alignment results are available for 2QZO.A explicitly.

It is represented by chain 3OLL.A which has more than 50% sequence identity.

Show structure comparison results for representative 3OLL.A

Entity #2 | Chains B

Description: Estrogen receptor protein | Length: 258

No structure alignment results are available for 2QZO.B explicitly.

It is represented by chain 3OLL.A which has more than 50% sequence identity.

Show structure comparison results for representative 3OLL.A

Entity #3 | Chains C,D

Description: Nuclear receptor coactivator 2 protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.

References

[1] Andreas Prlić; Spencer Bliven; Peter W. Rose; Wolfgang F. Bluhm; Chris Bizon; Adam Godzik; Philip E. Bourne (2010)
Pre-calculated protein structure alignments at the RCSB PDB website
Bioinformatics 26: 2983-2985
[2] The all vs. all comparisons are based on jFATCAT (a Java port of the original FATCAT algorithm Yuzhen Ye & Adam Godzik (2003))
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Bioinformatics vol.19 suppl. 2. ii246-ii255.

[3] Andreeva A., Howorth D., Chandonia J.-M., Brenner S.E., Hubbard T.J.P., Chothia C., Murzin A.G. (2008).
Data growth and its impact on the SCOP database: new developments.
Nucl. Acids Res. 2008 36: D419-D425
[4] Alexandrov N., Shindyalov I. (2003)
PDP: protein domain parser.
Bioinformatics 2003 Feb;19(3);429-30.

158367 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

2QZO

Crystal Structure of the Estrogen Receptor Alpha Ligand Binding Domain Complexed with WAY-169916

Structural Similarities for the Entities in PDB 2QZO

Info & Help Documentation

No structure alignment results are available for 2QZO.A explicitly.

No structure alignment results are available for 2QZO.B explicitly.

This entity is too short to be considered for the all vs. all structure alignments.

References

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158367 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

2QZO

Crystal Structure of the Estrogen Receptor Alpha Ligand Binding Domain Complexed with WAY-169916

Structural Similarities for the Entities in PDB 2QZO

Info & Help Documentation

No structure alignment results are available for 2QZO.A explicitly.

No structure alignment results are available for 2QZO.B explicitly.

This entity is too short to be considered for the all vs. all structure alignments.

References