Structural Similarities for the Entities in PDB 2O61

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains E

Description: 36-MER dna | Length: 36

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains F

Description: 34-MER dna | Length: 34

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: Transcription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion protein protein | Length: 540

  Loading...

Entity #4 | Chains B

Description: Nuclear factor NF-kappa-B p105 subunit protein | Length: 314

No structure alignment results are available for 2O61.B explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

Show structure comparison results

  Loading...

View how chain 2O61.B compares with the representative chain xxxx. Select a comparison method:


References