A high-resolution NMR structure of the dimeric C-terminal domain of HIV-1 CA

Structural Similarities for the Entities in PDB 2KOD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: HIV-1 CA C-terminal domain protein | Length: 88

No structure alignment results are available for 2KOD.A, 2KOD.B explicitly.

These chains are represented by chain 3DS4.A which has more than 95% sequence identity.

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View how chain 2KOD.B compares with the representative chain PDP:3DS4Aa. Select a comparison method: