How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription

Structural Similarities for the Entities in PDB 2JZW

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: HIV-1 nucleocapsid protein NCp7(12-55) protein | Length: 44

No structure alignment results are available for 2JZW.A explicitly.

It is represented by chain 2L4L.A which is 100% sequence identical.

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View how chain 2JZW.A compares with the representative chain PDP:2L4LA_. Select a comparison method:

Entity #2 | Chains B

Description: DNA (5'-D(*DGP*DTP*DCP*DCP*DCP*DTP*DGP*DTP*DTP*DCP*DGP*DGP*DGP*DC)-3') dna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.