Structural Similarities for the Entities in PDB 2J28

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains 0

Description: 50S RIBOSOMAL PROTEIN L32 protein | Length: 56

No structure alignment results are available for 2J28.0 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains B

Description: 23S RIBOSOMAL RNA rna | Length: 2904

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #11 | Chains C

Description: 50S RIBOSOMAL PROTEIN L2 protein | Length: 267

No structure alignment results are available for 2J28.C explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains D

Description: 50S RIBOSOMAL PROTEIN L3 protein | Length: 209

No structure alignment results are available for 2J28.D explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains E

Description: 50S RIBOSOMAL PROTEIN L4 protein | Length: 201

No structure alignment results are available for 2J28.E explicitly.

It is represented by chain 1DMG.a which has more than 40% sequence identity.

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Entity #14 | Chains F

Description: 50S RIBOSOMAL PROTEIN L5 protein | Length: 178

No structure alignment results are available for 2J28.F explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

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Entity #15 | Chains G

Description: 50S RIBOSOMAL PROTEIN L6 protein | Length: 176

No structure alignment results are available for 2J28.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #16 | Chains H

Description: 50S RIBOSOMAL PROTEIN L9 protein | Length: 149

No structure alignment results are available for 2J28.H explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains I

Description: 50S RIBOSOMAL PROTEIN L11 protein | Length: 141

No structure alignment results are available for 2J28.I explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #18 | Chains J

Description: 50S RIBOSOMAL PROTEIN L13 protein | Length: 140

No structure alignment results are available for 2J28.J explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #19 | Chains K

Description: 50S RIBOSOMAL PROTEIN L14 protein | Length: 121

No structure alignment results are available for 2J28.K explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

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Entity #2 | Chains 1

Description: 50S RIBOSOMAL PROTEIN L33 protein | Length: 54

No structure alignment results are available for 2J28.1 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #20 | Chains L

Description: 50S RIBOSOMAL PROTEIN L15 protein | Length: 144

No structure alignment results are available for 2J28.L explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #21 | Chains M

Description: 50S RIBOSOMAL PROTEIN L16 protein | Length: 136

No structure alignment results are available for 2J28.M explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #22 | Chains N

Description: 50S RIBOSOMAL PROTEIN L17 protein | Length: 127

No structure alignment results are available for 2J28.N explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #23 | Chains O

Description: 50S RIBOSOMAL PROTEIN L18 protein | Length: 117

No structure alignment results are available for 2J28.O explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #24 | Chains P

Description: 50S RIBOSOMAL PROTEIN L19 protein | Length: 114

No structure alignment results are available for 2J28.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #25 | Chains Q

Description: 50S RIBOSOMAL PROTEIN L20 protein | Length: 117

No structure alignment results are available for 2J28.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #26 | Chains R

Description: 50S RIBOSOMAL PROTEIN L21 protein | Length: 103

No structure alignment results are available for 2J28.R explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains S

Description: 50S RIBOSOMAL PROTEIN L22 protein | Length: 110

No structure alignment results are available for 2J28.S explicitly.

It is represented by chain 1I4J.a which has more than 50% sequence identity.

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Entity #28 | Chains T

Description: 50S RIBOSOMAL PROTEIN L23 protein | Length: 99

No structure alignment results are available for 2J28.T explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains U

Description: 50S RIBOSOMAL PROTEIN L24 protein | Length: 102

No structure alignment results are available for 2J28.U explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains 2

Description: 50S RIBOSOMAL PROTEIN L34 protein | Length: 46

No structure alignment results are available for 2J28.2 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #30 | Chains V

Description: 50S RIBOSOMAL PROTEIN L25 protein | Length: 94

No structure alignment results are available for 2J28.V explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #31 | Chains W

Description: 50S RIBOSOMAL PROTEIN L27 protein | Length: 84

No structure alignment results are available for 2J28.W explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains X

Description: 50S RIBOSOMAL PROTEIN L29 protein | Length: 63

No structure alignment results are available for 2J28.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #33 | Chains Y

Description: 50S RIBOSOMAL PROTEIN L30 protein | Length: 58

No structure alignment results are available for 2J28.Y explicitly.

It is represented by chain 1BXY.a which has more than 40% sequence identity.

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Entity #34 | Chains Z

Description: 50S RIBOSOMAL PROTEIN L31 protein | Length: 70

No structure alignment results are available for 2J28.Z explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #4 | Chains 3

Description: 50S RIBOSOMAL PROTEIN L35 protein | Length: 64

No structure alignment results are available for 2J28.3 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains 4

Description: 50S RIBOSOMAL PROTEIN L36 protein | Length: 38

No structure alignment results are available for 2J28.4 explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains 7

Description: SIGNAL SEQUENCE protein | Length: 18

This entity is too short to be considered for the all vs. all structure alignments.


Entity #7 | Chains 8

Description: 4.5S SIGNAL RECOGNITION PARTICLE RNA rna | Length: 74

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #8 | Chains 9

Description: SIGNAL RECOGNITION PARTICLE 54 protein | Length: 430

No structure alignment results are available for 2J28.9 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #9 | Chains A

Description: 5S RIBOSOMAL RNA rna | Length: 117

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


References