Structural Similarities for the Entities in PDB 2GO5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: SRP RNA rna | Length: 127

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains 9

Description: ribosomal RNA rna | Length: 90

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains B

Description: Signal recognition particle 19 kDa protein (SRP19) protein | Length: 108

No structure alignment results are available for 2GO5.B explicitly.

It is represented by chain 1MFQ.b which is 100% sequence identical.

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Entity #4 | Chains W

Description: Signal recognition particle 54 kDa protein (SRP54) protein | Length: 109

No structure alignment results are available for 2GO5.W explicitly.

It is represented by chain 1QB2.a which is 100% sequence identical.

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Entity #5 | Chains 1

Description: Signal recognition particle receptor alpha subunit (SR a) protein | Length: 185

No structure alignment results are available for 2GO5.1 explicitly.

It is represented by chain 2FH5.a which is 100% sequence identical.

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Entity #6 | Chains 2

Description: Signal recognition particle receptor beta subunit (SR b) protein | Length: 214

No structure alignment results are available for 2GO5.2 explicitly.

It is represented by chain 2FH5.b which is 100% sequence identical.

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Entity #7 | Chains 5

Description: ribosomal protein L35 protein | Length: 124

No structure alignment results are available for 2GO5.5 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains 4

Description: ribosomal protein L23 protein | Length: 152

No structure alignment results are available for 2GO5.4 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #9 | Chains 6

Description: ribosomal protein L31 protein | Length: 123

No structure alignment results are available for 2GO5.6 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References