Structural Similarities for the Entities in PDB 2FTC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains R

Description: Mitochondrial 16S ribosomal RNA rna | Length: 1568

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains J

Description: Mitochondrial ribosomal protein L17 protein | Length: 116

No structure alignment results are available for 2FTC.J explicitly.

It is represented by chain 3IY9.S which is 100% sequence identical.

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Entity #11 | Chains K

Description: 39S ribosomal protein L19, mitochondrial protein | Length: 98

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Entity #12 | Chains L

Description: MRPL20 protein protein | Length: 118

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Entity #13 | Chains M

Description: mitochondrial ribosomal protein L22 isoform a protein | Length: 110

No structure alignment results are available for 2FTC.M explicitly.

It is represented by chain 3IY9.M which is 100% sequence identical.

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Entity #14 | Chains N

Description: mitochondrial ribosomal protein L24 protein | Length: 96

No structure alignment results are available for 2FTC.N explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #15 | Chains O

Description: Mitochondrial 39S ribosomal protein L27 protein | Length: 69

No structure alignment results are available for 2FTC.O explicitly.

It is represented by chain 3IY9.O which is 100% sequence identical.

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Entity #16 | Chains P

Description: mitochondrial ribosomal protein L33 isoform a protein | Length: 52

No structure alignment results are available for 2FTC.P explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #17 | Chains Q

Description: 39S ribosomal protein L34, mitochondrial protein | Length: 38

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Entity #2 | Chains A

Description: Mitochondrial ribosomal protein L1 protein | Length: 189

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Entity #3 | Chains B

Description: mitochondrial ribosomal protein L2 protein | Length: 136

No structure alignment results are available for 2FTC.B explicitly.

It is represented by chain 3IY9.B which is 100% sequence identical.

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Entity #4 | Chains C

Description: Mitochondrial 39S ribosomal protein L3 protein | Length: 211

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Entity #5 | Chains D

Description: mitochondrial ribosomal protein L4 isoform a protein | Length: 175

No structure alignment results are available for 2FTC.D explicitly.

It is represented by chain 3IY9.D which is 100% sequence identical.

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Entity #6 | Chains E,F

Description: 39S ribosomal protein L12, mitochondrial protein | Length: 137

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Entity #7 | Chains G

Description: 39S ribosomal protein L11, mitochondrial protein | Length: 145

No structure alignment results are available for 2FTC.G explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains H

Description: 39S ribosomal protein L13, mitochondrial protein | Length: 148

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Entity #9 | Chains I

Description: Mitochondrial ribosomal protein L16 protein | Length: 118

No structure alignment results are available for 2FTC.I explicitly.

It is represented by chain 3IY9.I which is 100% sequence identical.

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References