Structural Similarities for the Entities in PDB 2FRV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G,I,S

Description: PERIPLASMIC HYDROGENASE protein | Length: 264

No structure alignment results are available for 2FRV.A, 2FRV.C, 2FRV.E, 2FRV.G, 2FRV.I, 2FRV.S explicitly.

These chains are represented by chain 4U9H.S which has more than 50% sequence identity.

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Entity #2 | Chains B,D,F,H,J,L

Description: PERIPLASMIC HYDROGENASE protein | Length: 536

No structure alignment results are available for 2FRV.B, 2FRV.D, 2FRV.F, 2FRV.H, 2FRV.J, 2FRV.L explicitly.

These chains are represented by chain 4U9H.L which has more than 50% sequence identity.

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References