Structural Similarities for the Entities in PDB 2A1T

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D

Description: Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor protein | Length: 421

No structure alignment results are available for 2A1T.A, 2A1T.B, 2A1T.C, 2A1T.D explicitly.

These chains are represented by chain 4P13.A which has more than 95% sequence identity.

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Entity #2 | Chains R

Description: Electron transfer flavoprotein alpha-subunit, mitochondrial precursor protein | Length: 333

No structure alignment results are available for 2A1T.R explicitly.

It is represented by chain 1EFV.a which is 100% sequence identical.

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Entity #3 | Chains S

Description: Electron transfer flavoprotein beta-subunit protein | Length: 255

No structure alignment results are available for 2A1T.S explicitly.

It is represented by chain 1EFV.b which has more than 95% sequence identity.

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References