Structural Similarities for the Entities in PDB 1Z8Y

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,C,E,G

Description: Spike glycoprotein E1 protein | Length: 290

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Entity #2 | Chains B,D,F,H

Description: Spike glycoprotein E1 protein | Length: 89

No structure alignment results are available for 1Z8Y.B, 1Z8Y.D, 1Z8Y.F, 1Z8Y.H explicitly.

These chains are represented by chain 2V33.a which has more than 50% sequence identity.

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Entity #3 | Chains I,K,M,O

Description: Spike glycoprotein E1 protein | Length: 31

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Entity #4 | Chains J,L,N,P

Description: Spike glycoprotein E2 protein | Length: 36

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Entity #5 | Chains Q,R,S,T

Description: Capsid protein C protein | Length: 151

No structure alignment results are available for 1Z8Y.Q, 1Z8Y.R, 1Z8Y.S, 1Z8Y.T explicitly.

These chains are represented by chain 4AGK.A which has more than 70% sequence identity.

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References