Structural Similarities for the Entities in PDB 1YAR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B,C,D,E,F,G

Description: Proteasome alpha subunit protein | Length: 233

No structure alignment results are available for 1YAR.A, 1YAR.B, 1YAR.C, 1YAR.D, 1YAR.E, 1YAR.F, 1YAR.G explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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View how chain 1YAR.G compares with the representative chain xxxx. Select a comparison method:

Entity #2 | Chains H,I,J,K,L,M,N

Description: Proteasome beta subunit protein | Length: 217


Entity #3 | Chains O,P,Q,R,S,T,U

Description: proteasome activator protein PA26 protein | Length: 237