1SEM

STRUCTURAL DETERMINANTS OF PEPTIDE-BINDING ORIENTATION AND OF SEQUENCE SPECIFICITY IN SH3 DOMAINS


Structural Similarities for the Entities in PDB 1SEM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A,B

Description: SEM-5 protein | Length: 58

No structure alignment results are available for 1SEM.A, 1SEM.B explicitly.

These chains are represented by chain XXXX.null which has more than 40% sequence identity.

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View how chain 1SEM.B compares with the representative chain xxxx. Select a comparison method:


Entity #2 | Chains C,D

Description: 10-RESIDUE PROLINE-RICH PEPTIDE FROM MSOS (ACE-PRO-PRO-PRO-VAL-PRO-PRO-ARG-ARG-ARG) protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.


References