Structural Similarities for the Entities in PDB 1RZT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains B,F,J,N

Description: 5'-D(*CP*GP*GP*CP*AP*AP*CP*GP*CP*AP*C)-3' dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C,G,K,O

Description: 5'-D(*GP*TP*GP*CP*G)-3' dna | Length: 5

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D,H,L,P

Description: 5'-D(P*GP*CP*CP*G)-3' dna | Length: 4

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A,E,I,M

Description: DNA polymerase lambda protein | Length: 331

No structure alignment results are available for 1RZT.A, 1RZT.E, 1RZT.I, 1RZT.M explicitly.

These chains are represented by chain 2BCQ.a which is 100% sequence identical.

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View how chain 1RZT.M compares with the representative chain d2bcqa1. Select a comparison method:


References