Structural Similarities for the Entities in PDB 1RM1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains D

Description: 5'-D(*AP*TP*CP*GP*AP*TP*CP*GP*AP*TP*AP*TP*AP*AP*AP*AP*CP*G)-3' dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains E

Description: 5'-D(P*CP*GP*TP*TP*TP*TP*AP*TP*AP*TP*CP*GP*AP*TP*CP*GP*AP*T)-3' dna | Length: 18

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: TATA-box binding protein protein | Length: 240

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Entity #4 | Chains B

Description: Transcription initiation factor IIA small chain protein | Length: 122

No structure alignment results are available for 1RM1.B explicitly.

It is represented by chain 1NH2.d which is 100% sequence identical.

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View how chain 1RM1.B compares with the representative chain d1nh2d1. Select a comparison method:


Entity #5 | Chains C

Description: Transcription initiation factor IIA large chain protein | Length: 286

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References