Fitting of L11 protein and elongation factor G (domain G' and V) in the cryo-em map of E. coli 70S ribosome bound with EF-G and GMPPCP, a nonhydrolysable GTP analog

Structural Similarities for the Entities in PDB 1JQS

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

You can also use the structure comparison tool to compare any 2 given structures

Entity #1 | Chains A

Description: 50S Ribosomal protein L11 protein | Length: 139

No structure alignment results are available for 1JQS.A explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

Show structure comparison results


View how chain 1JQS.A compares with the representative chain d3egvb1. Select a comparison method:

Entity #2 | Chains B

Description: Elongation Factor G protein | Length: 32


Entity #3 | Chains C

Description: Elongation Factor G protein | Length: 68