Sequence Similarity Clusters for the Entities in PDB 6R8Y

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 68 223
95 % 194 248 46
90 % 200 256 42
70 % 203 259 52
50 % 212 269 81
40 % 212 269 98
30 % 212 269 97
Entity #2 | Chains: B
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 191 251 24
95 % 212 273 33
90 % 219 282 35
70 % 220 281 46
50 % 220 281 78
40 % 220 281 95
30 % 220 281 93
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 90 180
95 % 186 253 37
90 % 179 236 65
70 % 191 251 57
50 % 198 258 89
40 % 198 258 104
30 % 198 258 103
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 89 181
95 % 139 171 102
90 % 187 245 63
70 % 197 256 53
50 % 202 263 85
40 % 202 263 101
30 % 202 263 100
Entity #5 | Chains: F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 192 251 24
95 % 213 273 33
90 % 220 282 35
70 % 221 281 46
50 % 221 281 78
40 % 221 281 95
30 % 221 281 93
Entity #6 | Chains: I
Human alpha-satellite DNA (145-MER) dna, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: J
Human alpha-satellite DNA (145-MER) with a 6-4PP at positions 95-96 dna, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: K
DNA damage-binding protein 1 protein, length: 1144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 25 1924
95 % 38 42 1294
90 % 38 42 1332
70 % 38 42 1362
50 % 38 42 1387
40 % 38 42 1445
30 % 38 42 1471
Entity #9 | Chains: L
DNA damage-binding protein 2 protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 18196
95 % 4 8 8687
90 % 4 8 8402
70 % 4 8 8163
50 % 4 8 7998
40 % 4 8 7388
30 % 4 8 7224

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures