Sequence Similarity Clusters for the Entities in PDB 6QM8

Entity #1 | Chains: A,O
Proteasome alpha1 chain protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26295
95 % 2 2 19729
90 % 2 2 19318
70 % 2 2 17921
50 % 2 2 16043
40 % 306 368 43
30 % 1879 2279 2
Entity #10 | Chains: J,X
Proteasome beta3 chain protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27174
95 % 2 2 20970
90 % 2 2 20508
70 % 2 2 18905
50 % 2 2 16856
40 % 306 364 46
30 % 306 364 47
Entity #11 | Chains: K,Y
Proteasome beta4 chain protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21111
95 % 2 2 19771
90 % 2 2 19353
70 % 2 2 17957
50 % 2 2 16070
40 % 2 2 14920
30 % 305 363 49
Entity #12 | Chains: L,Z
Proteasome beta5 chain protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27173
95 % 2 2 20969
90 % 2 2 20507
70 % 2 2 18904
50 % 2 2 16855
40 % 2 2 15607
30 % 2 2 14103
Entity #13 | Chains: M,a
Proteasome beta6 chain protein, length: 339 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27172
95 % 2 2 20968
90 % 2 2 20506
70 % 2 2 18903
50 % 2 2 16854
40 % 2 2 15606
30 % 2 2 14102
Entity #14 | Chains: N,b
Proteasome beta7 chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21110
95 % 2 2 19770
90 % 2 2 19352
70 % 2 2 17956
50 % 2 2 16069
40 % 22 31 1106
30 % 22 31 1143
Entity #2 | Chains: B,P
Proteasome alpha2 chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29231
95 % 2 2 23879
90 % 2 2 23182
70 % 2 2 21154
50 % 2 2 18717
40 % 306 367 42
30 % 1880 2279 2
Entity #3 | Chains: C,Q
Proteasome alpha3 chain protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29232
95 % 2 2 23880
90 % 2 2 23183
70 % 2 2 21155
50 % 2 2 18718
40 % 306 367 44
30 % 1881 2279 2
Entity #4 | Chains: D,R
Proteasome alpha4 chain protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26294
95 % 2 2 19728
90 % 2 2 19317
70 % 2 2 22765
50 % 306 364 38
40 % 317 394 19
30 % 1882 2279 2
Entity #5 | Chains: E,S
Proteasome alpha5 chain protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29228
95 % 2 2 23876
90 % 2 2 23180
70 % 2 2 21153
50 % 2 2 18716
40 % 2 2 17207
30 % 2 2 15480
Entity #6 | Chains: F,T
Proteasome alpha6 chain protein, length: 428 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29229
95 % 2 2 23877
90 % 2 2 23181
70 % 2 2 22578
50 % 2 2 19923
40 % 2 2 17208
30 % 2 2 15481
Entity #7 | Chains: G,U
Proteasome alpha7 chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29230
95 % 2 2 23878
90 % 2 2 24802
70 % 2 2 22579
50 % 2 2 19924
40 % 61 100 342
30 % 1883 2279 2
Entity #8 | Chains: H,V
Proteasome beta1 chain protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29227
95 % 2 2 23875
90 % 2 2 23179
70 % 2 2 21152
50 % 2 2 18715
40 % 2 2 17206
30 % 2 2 15479
Entity #9 | Chains: I,W
Proteasome beta2 chain protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26293
95 % 2 2 19727
90 % 2 2 19316
70 % 2 2 17920
50 % 4 25 1814
40 % 4 25 1846
30 % 4 25 1879

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures