Sequence Similarity Clusters for the Entities in PDB 6PXU

Entity #1 | Chains: A,B
Polypeptide N-acetylgalactosaminyltransferase 12 protein, length: 543 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52471
95 % 1 1 41900 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 34502
70 % 1 1 35291
50 % 2 3 13642
40 % 5 12 1881
30 % 5 14 1807
Entity #2 | Chains: C,D
GAGATGAGAGYYITPRTGAGA protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52472
95 % 1 1 36000
90 % 1 1 34503
70 % 1 1 30794
50 % 1 1 26808
40 % 1 1 24455
30 % 1 1 21767

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures