Sequence Similarity Clusters for the Entities in PDB 6PWE

Entity #1 | Chains: A,E
Histone H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 26 1021
95 % 185 250 42
90 % 191 258 41
70 % 194 261 51
50 % 203 271 79
40 % 203 271 96
30 % 203 271 96
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 5518
95 % 203 275 33
90 % 210 284 35
70 % 211 283 46
50 % 211 283 76
40 % 211 283 94
30 % 211 283 93
Entity #3 | Chains: C,G
Histone H2A protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 6541
95 % 4 6 7097
90 % 4 6 7645
70 % 182 253 55
50 % 189 260 86
40 % 189 260 101
30 % 189 260 102
Entity #4 | Chains: D,H
Histone H2B protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 7802
95 % 4 6 7046
90 % 4 6 7644
70 % 189 259 53
50 % 194 266 83
40 % 194 266 100
30 % 194 266 101
Entity #5 | Chains: I
DNA (147-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (147-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 4 D, H HISTONE H4-VI 9031
2 4H9N 2 B Histone H4 9606
3 4H9Q 2 B Histone H4 9606
4 1KX5 4 B, F histone H4 8355
5 4H9O 2 B Histone H4 9606
6 2ARO 4 D, H HISTONE H4-VI 9031
7 5B0Z 2 B, F Histone H4 9606
8 5Y0D 2 B, F Histone H4 9606
9 5Y0C 3 B, F Histone H4 9606
10 4H9R 2 B Histone H4 9606
11 1S32 3 B, F Histone H4 8355
12 4H9P 2 B Histone H4 9606
13 5AV8 2 B, F Histone H4 9606
14 1KX3 3 B, F histone H4 8355
15 5AV9 2 B, F Histone H4 9606
16 5AV6 2 B, F Histone H4 9606
17 1HQ3 4 D, H HISTONE H4-VI 9031
18 5BNX 2 B Histone H4 9606
19 3UTA 2 B, F Histone H4 8355
20 6KVD 3 B, F Histone H4 9606
21 5X7X 2 B, F Histone H4 9606
22 5B31 2 B, F Histone H4 9606
23 5B1L 2 B, F Histone H4 10090
24 6K1K 2 B, F Histone H4 9606
25 3UTB 2 B, F Histone H4 8355
26 1M19 3 B, F Histone H4 8355
27 5AVB 2 B, F Histone H4 9606
28 5AVC 2 B, F Histone H4 9606
29 5AV5 2 B, F Histone H4 9606
30 3C1B 2 B, F Histone H4 8355
31 5B1M 2 B, F Histone H4 10090
32 2NQB 3 B, F Histone H4 7227
33 5JA4 2 B Histone H4 9606
34 5OMX 4 B, F Histone H4 8355
35 6JR1 2 B, F Histone H4 9606
36 5F99 2 B, F Histone H4 8355
37 5Z30 2 B, F Histone H4 9606
38 5JRG 2 B, F Histone H4 9606
39 3UT9 2 B, F Histone H4 8355
40 5B32 2 B, F Histone H4 9606
41 3R45 2 B Histone H4 9606
42 4WU8 4 B, F Histone H4 8355
43 1P3I 3 B, F Histone H4 8355
44 3MGR 2 B, F Histone H4 8355
45 1F66 3 B, F HISTONE H4 10090
46 3AZG 2 B, F Histone H4 9606
47 1M18 3 B, F Histone H4 8355
48 5B2J 2 B, F Histone H4 9606
49 2PYO 4 B, F Histone H4 7227
50 1P3L 3 B, F Histone H4 8355
51 1EQZ 5 D, H PROTEIN (HISTONE H4) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
52 5B0Y 2 B, F Histone H4 9606
53 6JR0 2 B, F Histone H4 9606
54 2CV5 3 B, F Histone H4 9606
55 5CP6 4 B, F Histone H4 8355
56 5ZBX 2 B, F Histone H4 9606
57 5XF6 2 B, F Histone H4 8355
58 3MGP 2 B, F Histone H4 8355
59 3MVD 2 B, F Histone H4 8355
60 4J8U 2 B, F Histone H4 8355
61 4WU9 2 B, F Histone H4 8355
62 3REH 2 B, F Histone H4 8355
63 3AZL 2 B, F Histone H4 9606
64 5Z23 2 B, F Histone H4 9606
65 3NQU 2 B Histone H4 9606
66 5BNV 2 B, E Histone H4 9606
67 3AFA 2 B, F Histone H4 9606
68 5E5A 3 B, F Histone H4 8355
69 3REJ 2 B, F Histone H4 8355
70 3AZF 2 B, F Histone H4 9606
71 5GTC 2 B, F Histone H4 9606
72 1P3P 3 B, F Histone H4 8355
73 3AV1 2 B, F Histone H4 9606
74 1M1A 3 B, F Histone H4 8355
75 5CPK 2 B, F Histone H4 9606
76 5AY8 2 B, F Histone H4 9606
77 3MNN 2 B, F Histone H4 8355
78 5BO0 2 B Histone H4 9606
79 1P3G 3 B, F Histone H4 8355
80 4J8W 2 B, F Histone H4 8355
81 1P34 3 B, F Histone H4 8355
82 5XF3 2 B, F Histone H4 9606
83 3X1V 3 B, F Histone H4 9606
84 5ONG 4 B, F Histone H4 8355
85 5ONW 4 B, F Histone H4 8355
86 5DNM 2 B, F Histone H4 8355
87 4HGA 3 C Histone H4 9606
88 4UUZ 2 B HISTONE H4 7227
89 6K1I 2 B, F Histone H4 9606
90 3MGQ 2 B, F Histone H4 8355
91 3WTP 2 B, F Histone H4 9606
92 3X1T 3 B, F Histone H4 9606
93 2NZD 4 B, F Histone H4 8355
94 3A6N 2 B, F Histone H4 9606
95 5DNN 2 B, F Histone H4 8355
96 5GT3 2 B, F Histone H4 9606
97 5GT0 2 B, F Histone H4 9606
98 3LJA 2 B, F Histone H4 8355
99 3AZI 2 B, F Histone H4 9606
100 3TU4 2 B, F Histone H4 8355
101 1P3O 3 B, F Histone H4 8355
102 4Z2M 3 H, J Histone H4 9606
103 1KX4 3 B, F histone H4 8355
104 3AZN 2 B, F Histone H4 9606
105 1P3M 3 B, F Histone H4 8355
106 4J8V 2 B, F Histone H4 8355
107 5B33 2 B, F Histone H4 9606
108 3X1S 2 B, F Histone H4 9606
109 3LZ0 2 B, F Histone H4 8355
110 1P3F 3 B, F Histone H4 8355
111 1P3K 3 B, F Histone H4 8355
112 5B2I 2 B, F Histone H4 9606
113 1P3A 3 B, F Histone H4 8355
114 3LZ1 2 B, F Histone H4 8355
115 2IO5 3 C Histone H4 8355
116 5GXQ 2 B, F Histone H4 9606
117 2F8N 3 B, F Histone H4 8355
118 4Z5T 2 B, F Histone H4 9606
119 1U35 3 B, F Hist1h4i protein 10090
120 5XM0 2 B, F Histone H4 10090
121 3AV2 2 B, F Histone H4 9606
122 3AYW 2 B, F Histone H4 9606
123 5XF5 2 B, F Histone H4 9606
124 3AZJ 2 B, F Histone H4 9606
125 3REK 2 B, F Histone H4 8355
126 4KGC 2 B, F Histone H4 8355
127 1ZLA 3 B, F Histone H4 8355
128 5GSU 2 B, F Histone H4 9606
129 5XF4 2 B, F Histone H4 9606
130 3REL 2 B, F Histone H4 8355
131 5GSE 2 B, F, L, P Histone H4 9606
132 3REI 2 B, F Histone H4 8355
133 1P3B 3 B, F Histone H4 8355
134 3WKJ 2 B, F Histone H4 9606
135 3AZK 2 B, F Histone H4 9606
136 4J8X 2 B, F Histone H4 8355
137 3LEL 2 B, F, L, P Histone H4 8355
138 3KUY 2 B, F Histone H4 8355
139 4R8P 2 B, F Histone H4 8355
140 3AZM 2 B, F Histone H4 9606
141 3X1U 3 B, F Histone H4 9606
142 3MGS 2 B, F Histone H4 8355
143 3WA9 2 B, F Histone H4 9606
144 3C1C 2 B, F Histone H4 8355
145 3AZH 2 B, F Histone H4 9606
146 5B40 2 B, F Histone H4 9606
147 3WAA 2 B, F Histone H4 9606
148 5CPI 2 B, F Histone H4 9606
149 3AZE 2 B, F Histone H4 9606
150 3W96 2 B, F Histone H4 9606
151 6OM3 2 B, F, N, R Histone H4 8355
152 5XM1 2 B, F Histone H4 10090
153 6K1J 2 B, F Histone H4 9606
154 5CPJ 2 B, F Histone H4 9606
155 5B24 2 B, F Histone H4 9606
156 5BS7 2 C, D Histone H4 8355
157 5C3I 3 C, G, K, O, S, W Histone H4 9606
158 2HIO 4 D PROTEIN (HISTONE H4) 9031
159 4QLC 4 B, F Histone H4 7227
160 4LD9 2 B, F Histone H4 8355
161 3O62 2 B, F Histone H4 8355
162 4XUJ 2 B, F Histone H4 UNP residues 2-103 8355
163 5KDM 2 B Histone H4 9606
164 3W97 2 B, F Histone H4 9606
165 4YM5 2 B, F Histone H4 9606
166 4YM6 2 B, F Histone H4 9606
167 2FJ7 4 B, F Histone H4 8355
168 3W98 2 B, F Histone H4 9606
169 4ZUX 2 B, F, L, P Histone H4 8355
170 3AN2 2 B, F Histone H4 9606
171 5BSA 2 C, D Histone H4 8355
172 3B6F 4 B, F Histone H4 8355
173 5OY7 3 B, F, J, N, R, V, Z, d Histone H4 8355
174 3B6G 4 B, F Histone H4 8355
175 5NL0 2 B, F, L Histone H4 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
176 3KXB 2 B, F Histone H4 8355
177 5HQ2 2 B Histone H4 8355
178 6HKT 2 B, F, L, P, V, Z, b, f, l, p, v, z Histone H4 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
179 5OXV 4 B, F, L, P Histone H4 8355
180 1ZBB 4 B, F, b, f Histone H4 8355
181 6LTJ 2 B, F Histone H4 8355
182 6VEN 2 B, F Histone H4 8355
183 6V92 24 b, f Histone H4 9606
184 6T9L 2 B, F Histone H4 8355
185 6UPK 2 B, F Histone H4 9606
186 6UPL 2 B, F Histone H4 9606
187 6L49 2 B, F, L, P, T, X Histone H4 9606
188 6L4A 2 B, F, L, P, T, X Histone H4 9606
189 6UGM 2 B, F Histone H4 8355
190 6UH5 2 B, F Histone H4 8355
191 6KW4 2 B, R Histone H4 8355
192 6KW3 1 B, R Histone H4 8355
193 6SEG 2 B, F Histone H4 9606
194 6SE0 2 B, F Histone H4 9606
195 6SE6 2 B, F Histone H4 9606
196 6SEE 2 B, F Histone H4 9606
197 6SEF 2 B, F Histone H4 9606
198 6PX1 2 B, F Histone H4 8355
199 6PX3 2 B, F Histone H4 8355
200 6PWV 5 H, L Histone H4 8355
201 6PWW 5 H, L Histone H4 8355
202 6PWX 3 H, L Histone H4 8355
203 6PWE 2 B, F Histone H4 7227
204 6PWF 2 B, F Histone H4 7227
205 6KIU 2 B, F Histone H4 8355
206 6KIV 2 B, F Histone H4 8355
207 6KIW 2 B, F Histone H4 8355
208 6KIX 2 B, F Histone H4 8355
209 6KIZ 2 B, F Histone H4 8355
210 6S01 2 B, F Histone H4 8355
211 6K1P 2 B, F Histone H4 8355
212 6RNY 2 B, F Histone H4 9606
213 6JYL 2 B, F Histone H4 8355
214 6R8Y 2 B Histone H4 9606
215 6R8Y 5 F Histone H4 9606
216 6R8Z 2 B, F Histone H4 9606
217 6R90 2 B, F Histone H4 9606
218 6R91 2 B, F Histone H4 9606
219 6R92 5 B, F Histone H4 9606
220 6R93 4 B, F Histone H4 9606
221 6R94 4 B, F Histone H4 9606
222 6R1U 2 B, F Histone H4 8355
223 6R25 5 B, F H4 8355
224 6O96 2 B, F Histone H4 8355
225 6R0C 2 B, F Histone H4 9606
226 6O22 5 F Histone H4 8355
227 6O1D 2 B, F Histone H4 9606
228 6NZO 2 B, F Histone H4 8355
229 6J99 2 B, F Histone H4 8355
230 6NQA 3 B, F Histone H4 8355
231 6NOG 2 B, F Histone H4 8355
232 6NN6 2 B, F Histone H4 8355
233 6J4W 20 b, f Histone H4 9606
234 6J4X 20 b, f Histone H4 9606
235 6J4Y 20 b, f Histone H4 9606
236 6J4Z 19 b, f Histone H4 9606
237 6J50 19 b, f Histone H4 9606
238 6J51 20 b, f Histone H4 9606
239 6NJ9 1 B, F Histone H4 8355
240 6NE3 2 B, F Histone H4 8355
241 6I84 5 O, U Histone H4 8355
242 6IRO 3 B, F Histone H4 8355
243 6IR9 20 b, f Histone H4 9606
244 6INQ 17 b, f Histone H4 9606
245 6MUO 2 B, F Histone H4 9606
246 6MUP 2 B, F Histone H4 9606
247 6HTS 6 J, N Histone H4 9606
248 6E0C 2 B, F Histone H4 9606
249 6E0P 2 B, F Histone H4 9606
250 6DZT 2 B, F Histone H4 7227
251 6A5O 17 b, f Histone H4 9606
252 6A5P 17 b, f Histone H4 9606
253 6A5R 17 b, f Histone H4 9606
254 6A5T 17 b, f Histone H4 9606
255 6A5U 17 b, f Histone H4 9606
256 6A5L 17 b, f Histone H4 9606
257 6G0L 2 B, F Histone H4 Histone H4 sequence from X. Laevis. The N-terminal region from 1-19 is not resolved. 8355
258 6FTX 2 B, F Histone H4 8355
259 6FML 10 N, R Histone H4 9606
260 5Z3L 2 B, F Histone H4 8355
261 5Z3O 2 B, F Histone H4 8355
262 5Z3T 3 B, F Histone H4 8355
263 5Z3U 3 B, F Histone H4 8355
264 5Z3V 3 B, F Histone H4 8355
265 6C0W 2 B, F Histone H4 9606
266 6BUZ 2 B, F Histone H4 9606
267 6ESF 2 B, F Histone H4 8355
268 6ESG 2 B, F Histone H4 8355
269 6ESH 2 B, F Histone H4 8355
270 6ESI 2 B, F Histone H4 8355
271 5O9G 2 B, F Histone H4 8355
272 5X0X 2 B, F Histone H4 8355
273 5X0Y 2 B, F Histone H4 8355
274 5KGF 2 B, F Histone H4 cysteine alkylation at position 20 8355
275 3C9K 4 D, H Histone H4 9031