Sequence Similarity Clusters for the Entities in PDB 6PWE

Entity #1 | Chains: A,E
Histone H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 26 1019
95 % 185 250 42
90 % 191 258 43
70 % 194 261 51
50 % 203 271 79
40 % 203 271 95
30 % 203 271 95
Entity #2 | Chains: B,F
Histone H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 5510
95 % 203 275 34
90 % 210 284 36
70 % 211 283 46
50 % 211 283 76
40 % 211 283 92
30 % 211 283 92
Entity #3 | Chains: C,G
Histone H2A protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 6 6002
95 % 4 6 7436
90 % 4 6 7413
70 % 182 253 54
50 % 189 260 85
40 % 189 260 100
30 % 189 260 100
Entity #4 | Chains: D,H
Histone H2B protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 8080
95 % 4 6 7693
90 % 4 6 7665
70 % 189 259 53
50 % 194 266 82
40 % 194 266 99
30 % 194 266 99
Entity #5 | Chains: I
DNA (147-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: J
DNA (147-MER) dna, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TZY 3 C, G HISTONE H3 9031
2 4H9N 1 A Histone H3.3 9606
3 4H9Q 1 A Histone H3.3 9606
4 1KX5 3 A, E histone H3 8355
5 4H9O 1 A Histone H3.3 9606
6 2ARO 3 C, G HISTONE H3 9031
7 5B0Z 1 A, E Histone H3.2 9606
8 5Y0D 1 A, E Histone H3.1 9606
9 5Y0C 2 A, E Histone H3.1 9606
10 4H9R 1 A Histone H3.3 9606
11 1S32 2 A, E histone H3 8355
12 4H9P 1 A Histone H3.3 9606
13 5AV8 1 A, E Histone H3.1 9606
14 1KX3 2 A, E histone H3 8355
15 5AV9 1 A, E Histone H3.1 9606
16 5AV6 1 A, E Histone H3.1 9606
17 1HQ3 3 C, G HISTONE H3 9031
18 3UTA 1 A, E Histone H3.2 8355
19 6KVD 2 A, E Histone H3.1 9606
20 5X7X 1 A, E Histone H3.3 9606
21 5B31 1 A, E Histone H3.1 9606
22 5B1L 1 A, E Histone H3t 10090
23 6K1K 1 A, E Histone H3.1 9606
24 3UTB 1 A, E Histone H3.2 8355
25 1M19 2 A, E Histone H3.2 8355
26 5AVB 1 A, E Histone H3.1 9606
27 5AVC 1 A, E Histone H3.1 9606
28 5AV5 1 A, E Histone H3.1 9606
29 3C1B 1 A, E Histone H3-like 8355
30 5B1M 1 A, E Histone H3.1 10090
31 2NQB 2 A, E Histone H3 7227
32 5OMX 3 A, E Histone H3.2 8355
33 6JR1 1 A, E Histone H3.1 9606
34 5F99 1 A, E Histone H3.2 8355
35 5Z30 1 A, E Histone H3.1 9606
36 5JRG 1 A, E Histone H3.1 9606
37 3UT9 1 A, E Histone H3.2 8355
38 5B32 1 A, E Histone H3.3 9606
39 4WU8 3 A, E Histone H3.2 8355
40 1P3I 2 A, E Histone H3 8355
41 3MGR 1 A, E Histone H3.2 8355
42 1F66 2 A, E HISTONE H3 8355
43 3AZG 1 A, E Histone H3.1 9606
44 4H9S 1 A, B Histone H3.3 9606
45 1M18 2 A, E Histone H3.2 8355
46 5B2J 1 A, E Histone H3.1 9606
47 2PYO 3 A, E Histone H3 7227
48 1P3L 2 A, E Histone H3 8355
49 1EQZ 4 C, G PROTEIN (HISTONE H3) SUBUNIT OF SALT-EXTRACTED HISTONE OCTAMER 9031
50 5B0Y 1 A, E Histone H3.2 9606
51 6JR0 1 A, E Histone H3.1 9606
52 2CV5 2 A, E Histone H3.1 9606
53 5CP6 3 A, E Histone H3.2 8355
54 5XF6 1 A, E Histone H3.2 8355
55 3MGP 1 A, E Histone H3.2 8355
56 3MVD 1 A, E Histone H3.2 8355
57 4J8U 1 A, E Histone H3.2 8355
58 4WU9 1 A, E Histone H3.2 8355
59 3REH 1 A, E Histone H3.2 8355
60 3AZL 1 A, E Histone H3.1 9606
61 3AFA 1 A, E Histone H3.1 9606
62 5E5A 2 A, E Histone H3.2 8355
63 3REJ 1 A, E Histone H3.2 8355
64 3AZF 1 A, E Histone H3.1 9606
65 5GTC 1 A, E Histone H3.1 9606
66 1P3P 2 A, E Histone H3 8355
67 3AV1 1 A, E Histone H3.2 9606
68 1M1A 2 A, E Histone H3.2 8355
69 5CPK 1 A, E Histone H3.1 9606
70 3MNN 1 A, E Histone H3.2 8355
71 1P3G 2 A, E Histone H3 8355
72 4J8W 1 A, E Histone H3.2 8355
73 1P34 2 A, E Histone H3 8355
74 5XF3 1 A, E Histone H3.1 9606
75 3X1V 2 A, E Histone H3.1 9606
76 5ONG 3 A, E Histone H3.2 8355
77 5ONW 3 A, E Histone H3.2 8355
78 5DNM 1 A, E Histone H3.2 8355
79 4HGA 2 B Histone H3.3 9606
80 4UUZ 1 A HISTONE H3 7227
81 6K1I 1 A, E Histone H3.1 9606
82 3MGQ 1 A, E Histone H3.2 8355
83 3WTP 5 E Histone H3.3 9606
84 3X1T 2 A, E Histone H3.1 9606
85 2NZD 3 A, E Histone H3 8355
86 3A6N 1 A, E Histone H3.1t 9606
87 5DNN 1 A, E Histone H3.2 8355
88 5GT3 1 A, E Histone H3.1 9606
89 5GT0 1 A, E Histone H3.1 9606
90 3LJA 1 A, E Histone H3.2 8355
91 3AZI 1 A, E Histone H3.1 9606
92 3TU4 1 A, E Histone H3.2 8355
93 1P3O 2 A, E Histone H3 8355
94 1KX4 2 A, E histone H3 8355
95 3AZN 1 A, E Histone H3.1 9606
96 1P3M 2 A, E Histone H3 8355
97 4J8V 1 A, E Histone H3.2 8355
98 5B33 1 A, E Histone H3.3 9606
99 3X1S 1 A, E Histone H3.1 9606
100 3LZ0 1 A, E Histone H3.2 8355
101 1P3F 2 A, E Histone H3 8355
102 1P3K 2 A, E Histone H3 8355
103 5B2I 1 A, E Histone H3.1 9606
104 1P3A 2 A, E Histone H3 8355
105 3LZ1 1 A, E Histone H3.2 8355
106 2IO5 2 B Histone H3.1 8355
107 5GXQ 1 A, E Histone H3.6 9606
108 2F8N 2 A, E Histone H3.1 8355
109 4Z5T 1 A, E Histone H3.3C 9606
110 1U35 2 A, E Histone H3.1 10090
111 5XM0 1 A, E Histone H3.3 10090
112 3AV2 1 A, E Histone H3.3 9606
113 3AYW 1 A, E Histone H3.1 9606
114 5XF5 1 A, E Histone H3.1 9606
115 3AZJ 1 A, E Histone H3.1 9606
116 3REK 1 A, E Histone H3.2 8355
117 4KGC 1 A, E Histone H3.2 8355
118 1ZLA 2 A, E histone H3 8355
119 5GSU 1 A, E Histone H3.1 9606
120 5XF4 1 A, E Histone H3.1 9606
121 3REL 1 A, E Histone H3.2 8355
122 5GSE 1 A, E, K, O Histone H3.1 9606
123 3REI 1 A, E Histone H3.2 8355
124 1P3B 2 A, E Histone H3 8355
125 3WKJ 1 A, E Histone H3.1 9606
126 4KUD 1 A, E Histone H3 4932
127 3AZK 1 A, E Histone H3.1 9606
128 4J8X 1 A, E Histone H3.2 8355
129 3LEL 1 A, E, K, O Histone H3.2 8355
130 3KUY 1 A, E Histone H3.2 8355
131 4R8P 1 A, E Histone H3.2 8355
132 3AZM 1 A, E Histone H3.1 9606
133 3X1U 2 A, E Histone H3.1 9606
134 3MGS 1 A, E Histone H3.2 8355
135 3WA9 1 A, E Histone H3.1 9606
136 1ID3 2 A, E HISTONE H3 4932
137 3C1C 1 A, E Histone H3-like 8355
138 3AZH 1 A, E Histone H3.1 9606
139 5B40 1 A, E Histone H3.2 9606
140 3WAA 1 A, E Histone H3.1 9606
141 5CPI 1 A, E Histone H3.1 9606
142 4JJN 1 A, E Histone H3 4932
143 3W99 1 A, E Histone H3.1 9606
144 3AZE 1 A, E Histone H3.1 9606
145 3W96 1 A, E Histone H3.1 9606
146 6OM3 1 A, E, M, Q Histone H3.2 8355
147 5XM1 1 A, E Histone H3mm7 10090
148 6K1J 1 A, E Histone H3.1 9606
149 5CPJ 1 A, E Histone H3.1 9606
150 5B24 1 A, E Histone H3.1 9606
151 5C3I 2 B, F, J, N, R, V Histone H3.1 9606
152 2HIO 3 C PROTEIN (HISTONE H3) 9031
153 4QLC 3 A, E Histone H3 7227
154 4LD9 1 A, E Histone H3.2 8355
155 5ZBB 3 C Histone H3 4932
156 3O62 1 A, E Histone H3.2 8355
157 4XUJ 1 A, E Histone H3.2 UNP residues 2-136 8355
158 5KDM 1 A Histone H3.3 9606
159 3W97 1 A, E Histone H3.1 9606
160 4YM5 1 A, E Histone H3.1 9606
161 5ZBA 3 C Histone H3 4932
162 4YM6 1 A, E Histone H3.1 9606
163 2FJ7 3 A, E histone H3 8355
164 4ZUX 1 A, E, K, O Histone H3.2 8355
165 3B6F 3 A, E Histone H3.2 8355
166 5OY7 2 A, E, I, M, Q, U, Y, c Histone H3 8355
167 3B6G 3 A, E Histone H3.2 8355
168 5NL0 1 A, E, K Histone H3.2 The core histones in the uploaded coordinates are those from X. laevis while those in the crystal are human. The reason for the discrepancy is that the structure was solved using pdb 3UT9 as a molecular replacement template (because it had the same 601L DNA sequence and therefore was the closest high-res structure available). 8355
169 3KXB 1 A, E Histone H3.2 8355
170 5HQ2 1 A Histone H3.2 8355
171 6HKT 1 A, E, K, O, U, Y, a, e, k, o, u, y Histone H3.1 THE 3 N-TERMINAL RESIDUES (GSH) COME FROM THE EXPRESSION TAG 9606
172 5OXV 5 A, E, K, O Histone H3.2 8355
173 1ZBB 3 A, E, a, e HISTONE H3 8355
174 6LTJ 1 A, E Histone H3.3 8355
175 6VEN 1 A, E Histone H3.2 8355
176 6V92 23 a, e Histone H3.1 9606
177 6T9L 1 A, E Histone H3.2 8355
178 6UPK 1 A, E Histone H3.1 9606
179 6UPL 1 A, E Histone H3.1 9606
180 6L49 7 K, O, S, W Histone H3.1 9606
181 6L4A 1 A, E, K, O, S, W Histone H3.1 9606
182 6UGM 1 A, E Histone H3 8355
183 6UH5 1 A, E Histone H3 8355
184 6KW4 1 N, Q Histone H3.2 8355
185 6KW3 2 N, Q Histone H3.2 8355
186 6PX1 1 A, E Histone H3 8355
187 6PX3 1 A, E Histone H3 8355
188 6PWV 4 G, K Histone H3.2 8355
189 6PWW 4 G, K Histone H3.2 8355
190 6PWX 2 G, K Histone H3.2 8355
191 6PWE 1 A, E Histone H3 7227
192 6PWF 1 A, E Histone H3 7227
193 6KIU 1 A, E Histone H3 8355
194 6KIV 1 A, E Histone H3 8355
195 6KIW 1 A, E Histone H3 8355
196 6KIX 1 A, E Histone H3 8355
197 6KIZ 1 A, E Histone H3 8355
198 6S01 1 A, E Histone H3 residue K36 was chemically modified to be ML3. 8355
199 6K1P 1 A, E Histone H3 8355
200 6RNY 1 A, E Histone H3.3 9606
201 6JYL 1 A, E Histone H3 8355
202 6R8Y 1 A, E Histone H3.1 9606
203 6R8Z 1 A, E Histone H3.1 9606
204 6R90 1 A, E Histone H3.1 9606
205 6R91 1 A, E Histone H3.1 9606
206 6R92 4 A, E Histone H3.1 9606
207 6R93 3 A, E Histone H3.1 9606
208 6R94 3 A, E Histone H3.1 9606
209 6R1U 1 A, E Histone H3.2 8355
210 6R1U 9 M Histone H3 8355
211 6R25 3 M Histone H3 8355
212 6R25 4 A, E Histone H3 8355
213 6O96 1 A, E Histone H3.2 8355
214 6R0C 1 A, E Histone H3.3 9606
215 6O22 4 E Histone H3.2 8355
216 6NZO 1 A, E Histone H3 8355
217 6J99 1 A, E Histone H3 8355
218 6NQA 8 A, E Histone H3.2 8355
219 6NOG 1 A, E Histone H3.2 8355
220 6NN6 1 A, E Histone H3.2 8355
221 6J4W 19 a, e Histone H3.3 9606
222 6J4X 19 a, e Histone H3.3 9606
223 6J4Y 19 a, e Histone H3.3 9606
224 6J4Z 18 a, e Histone H3.3 9606
225 6J50 18 a, e Histone H3.3 9606
226 6J51 19 a, e Histone H3.3 9606
227 6NJ9 6 A, E Histone H3.2 8355
228 6NE3 1 A, E Histone H3.2 8355
229 6I84 1 M, S Histone H3.2 8355
230 6IRO 2 A, E Histone H3 8355
231 6IR9 19 a, e Histone H3.3 9606
232 6INQ 16 a, e Histone H3.3 9606
233 6HTS 5 I, M Histone H3.1 9606
234 6DZT 1 A, E Histone H3 7227
235 6A5O 16 a, e Histone H3.3 9606
236 6A5P 16 a, e Histone H3.3 9606
237 6A5R 16 a, e Histone H3.3 9606
238 6A5T 16 a, e Histone H3.3 9606
239 6A5U 16 a, e Histone H3.3 9606
240 6A5L 16 a, e Histone H3.3 9606
241 6GEN 2 A, B Histone H3 4932
242 6GEJ 2 A, B Histone H3 4932
243 6G0L 1 A, E Histone H3 Histone H3 sequence from X. Laevis. The N-terminal region from 1-39 is not resolved. 8355
244 6FML 9 M, Q Histone H3.2 9606
245 5Z3L 1 A, E Histone H3.2 8355
246 5Z3O 1 A, E Histone H3.2 8355
247 5Z3T 2 A, E Histone H3.2 8355
248 5Z3U 2 A, E Histone H3.2 8355
249 5Z3V 2 A, E Histone H3.2 8355
250 6ESF 1 A, E Histone H3.2 8355
251 6ESG 1 A, E Histone H3.2 8355
252 6ESH 1 A, E Histone H3.2 8355
253 6ESI 1 A, E Histone H3.2 8355
254 5O9G 1 A, E Histone H3.2 8355
255 5X0X 1 A, E Histone H3.2 8355
256 5X0Y 1 A, E Histone H3.2 8355
257 5KGF 1 A, E Histone H3.2 8355
258 3C9K 3 C, G Histone H3.2 9031