Sequence Similarity Clusters for the Entities in PDB 6PW2

Entity #1 | Chains: A,B,C,D,I,J,K,L
Epstein-Barr nuclear antigen 1 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7194
95 % 8 8 3113 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.6
PDBFlex
90 % 9 9 2849
70 % 9 9 2902
50 % 9 9 2895
40 % 9 9 2898
30 % 9 9 2873
Entity #2 | Chains: E,G
DNA (62-MER) dna, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,H
DNA (62-MER) complementary DNA strand dna, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures