6P09

Human DNA Ligase 1 Bound to an Adenylated, dideoxy Terminated DNA nick with 200 mM Mg2+


Sequence Similarity Clusters for the Entities in PDB 6P09

Entity #1 | Chains: A
DNA ligase 1 protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 21792
95 % 6 8 10771
90 % 6 8 10673
70 % 6 8 10305
50 % 6 8 9563
40 % 6 8 9106
30 % 6 11 6824
Entity #2 | Chains: B
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6P0C 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
2 6P0D 1 A DNA ligase 1 9606 6.5.1.1 | Details
3 6P0E 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
4 6Q1V 1 A DNA ligase 1 9606 6.5.1.1 | Details
5 6P0A 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
6 6P09 1 A DNA ligase 1 9606 6.5.1.1 | Details
7 6P0B 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
8 2HIV 1 A Thermostable DNA ligase 2287 6.5.1.1 | Details
9 2HIX 1 A Thermostable DNA ligase 2287 6.5.1.1 | Details
10 3L2P 1 A DNA ligase 3 UNP residues 257-833 9606 5.6.1.6 | Details 6.5.1.1 | Details
11 1X9N 4 A DNA ligase I 9606 6.5.1.1 | Details