6P09

Human DNA Ligase 1 Bound to an Adenylated, dideoxy Terminated DNA nick with 200 mM Mg2+


Sequence Similarity Clusters for the Entities in PDB 6P09

Entity #1 | Chains: A
DNA ligase 1 protein, length: 645 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 23683
95 % 6 8 11680
90 % 6 8 11561
70 % 6 8 11084
50 % 6 8 10218
40 % 6 8 9686
30 % 6 11 6883
Entity #2 | Chains: B
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(P*GP*TP*CP*GP*GP*AP*C)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6P0C 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
2 6P0A 1 A DNA ligase 1 residues 262-904 9606 6.5.1.1 | Details
3 6P09 1 A DNA ligase 1 9606 6.5.1.1 | Details
4 1X9N 4 A DNA ligase I 9606 6.5.1.1 | Details