6OUN

Structure of HIV-1 Reverse Transcriptase (RT) in complex with dsDNA and (-)3TC-TP


Sequence Similarity Clusters for the Entities in PDB 6OUN

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 18 3935
95 % 124 305 106
90 % 124 305 115
70 % 124 305 126
50 % 125 306 141
40 % 125 307 159
30 % 125 307 165
Entity #2 | Chains: B
P51 RT protein, length: 452 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 19 3611
95 % 121 299 114
90 % 121 299 121
70 % 121 299 133
50 % 122 300 150
40 % 122 301 166
30 % 122 301 173
Entity #3 | Chains: P
DNA primer 20-mer dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: T
DNA template 27-mer dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures