6OGG

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).


Sequence Similarity Clusters for the Entities in PDB 6OGG

Entity #1 | Chains: b
50S ribosomal protein L2 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 186 142
95 % 57 186 182
90 % 57 186 196
70 % 61 190 202
50 % 280 465 50
40 % 280 465 62
30 % 280 465 62
Entity #10 | Chains: m
50S ribosomal protein L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 177 162
95 % 57 186 179
90 % 57 186 192
70 % 61 190 203
50 % 279 463 52
40 % 279 463 63
30 % 279 463 63
Entity #11 | Chains: n
50S ribosomal protein L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 6 15848
95 % 57 189 171
90 % 57 189 183
70 % 61 193 195
50 % 270 423 61
40 % 284 462 56
30 % 284 464 56
Entity #12 | Chains: o
50S ribosomal protein L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 187 138
95 % 57 187 178
90 % 57 187 189
70 % 57 187 210
50 % 266 445 59
40 % 266 445 75
30 % 266 445 76
Entity #13 | Chains: p
50S ribosomal protein L19 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 189 132
95 % 57 189 170
90 % 57 189 182
70 % 61 193 193
50 % 80 242 179
40 % 80 242 193
30 % 80 242 204
Entity #14 | Chains: q
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 190 130
95 % 57 190 166
90 % 57 190 180
70 % 61 194 189
50 % 284 465 47
40 % 284 473 54
30 % 284 473 55
Entity #15 | Chains: r
50S ribosomal protein L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 186 143
95 % 57 186 180
90 % 57 186 193
70 % 57 186 212
50 % 61 190 229
40 % 283 460 66
30 % 283 460 66
Entity #16 | Chains: s
50S ribosomal protein L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 189 134
95 % 57 189 173
90 % 57 189 184
70 % 57 189 206
50 % 262 434 60
40 % 262 434 76
30 % 262 434 77
Entity #17 | Chains: t
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 193 121
95 % 57 193 156
90 % 57 193 171
70 % 57 193 194
50 % 61 197 218
40 % 281 466 59
30 % 281 466 60
Entity #18 | Chains: u
50S ribosomal protein L24 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 192 123
95 % 57 192 160
90 % 57 192 174
70 % 57 192 198
50 % 255 438 58
40 % 255 438 74
30 % 255 440 75
Entity #19 | Chains: v
50S ribosomal protein L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 193 120
95 % 58 193 155
90 % 58 193 170
70 % 58 193 192
50 % 59 194 210
40 % 59 194 226
30 % 59 194 242
Entity #2 | Chains: c
50S ribosomal protein L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 198 125
95 % 64 198 162
90 % 64 198 176
70 % 68 202 187
50 % 289 471 51
40 % 289 475 57
30 % 289 476 57
Entity #20 | Chains: w
50S ribosomal protein L27 protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 188 139
95 % 58 189 175
90 % 58 189 186
70 % 87 218 172
50 % 285 462 49
40 % 285 462 61
30 % 285 462 61
Entity #21 | Chains: x
50S ribosomal protein L28 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 173 161
95 % 54 173 215
90 % 54 173 225
70 % 58 177 245
50 % 58 179 252
40 % 58 179 267
30 % 58 179 290
Entity #22 | Chains: y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 193 122
95 % 57 193 158
90 % 57 193 173
70 % 57 193 197
50 % 61 197 220
40 % 236 391 89
30 % 262 417 83
Entity #23 | Chains: z
50S ribosomal protein L30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 190 128
95 % 57 190 167
90 % 57 190 178
70 % 57 190 200
50 % 98 248 176
40 % 283 455 68
30 % 283 455 69
Entity #24 | Chains: B
50S ribosomal protein L32 protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 187 137
95 % 57 187 177
90 % 57 187 188
70 % 57 187 209
50 % 61 191 228
40 % 61 191 237
30 % 75 223 222
Entity #25 | Chains: C
50S ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 186 141
95 % 57 186 183
90 % 57 186 195
70 % 61 190 204
50 % 83 215 197
40 % 248 421 81
30 % 248 421 84
Entity #26 | Chains: D
50S ribosomal protein L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 185 144
95 % 57 185 185
90 % 57 185 197
70 % 89 218 171
50 % 283 459 54
40 % 283 459 67
30 % 283 459 67
Entity #27 | Chains: E
50S ribosomal protein L35 protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 182 147
95 % 57 182 187
90 % 57 182 198
70 % 57 182 223
50 % 68 208 206
40 % 68 208 221
30 % 68 208 234
Entity #28 | Chains: F
50S ribosomal protein L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 180 151
95 % 56 180 199
90 % 56 180 210
70 % 60 184 221
50 % 217 399 80
40 % 217 399 95
30 % 217 399 92
Entity #29 | Chains: G
30S ribosomal protein S2 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 175 160
95 % 55 175 211
90 % 55 175 221
70 % 59 179 233
50 % 360 534 33
40 % 360 540 38
30 % 360 540 41
Entity #3 | Chains: d
50S ribosomal protein L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 189 133
95 % 57 189 174
90 % 57 189 185
70 % 57 189 207
50 % 61 193 225
40 % 76 226 205
30 % 286 457 70
Entity #30 | Chains: H
30S ribosomal protein S3 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 80 397
95 % 24 81 522
90 % 24 81 544
70 % 24 81 581
50 % 278 359 88
40 % 278 359 102
30 % 278 359 101
Entity #31 | Chains: I
30S ribosomal protein S4 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 179 150
95 % 55 179 194
90 % 55 179 205
70 % 59 183 216
50 % 359 518 36
40 % 361 548 34
30 % 361 548 37
Entity #32 | Chains: J
30S ribosomal protein S5 protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 167 163
95 % 55 180 191
90 % 55 180 202
70 % 59 184 215
50 % 362 538 31
40 % 362 538 40
30 % 362 538 42
Entity #33 | Chains: K
30S ribosomal protein S6 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 79 407
95 % 24 81 520
90 % 24 81 549
70 % 24 81 586
50 % 24 81 621
40 % 24 81 653
30 % 24 81 687
Entity #34 | Chains: L
30S ribosomal protein S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 12 6691
95 % 58 176 212
90 % 58 176 222
70 % 36 107 446
50 % 346 474 56
40 % 346 480 70
30 % 346 480 71
Entity #35 | Chains: M
30S ribosomal protein S8 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 180 148
95 % 56 180 188
90 % 56 180 199
70 % 56 180 226
50 % 364 547 26
40 % 364 553 31
30 % 435 744 23
Entity #36 | Chains: N
30S ribosomal protein S9 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 178 154
95 % 55 178 200
90 % 55 178 214
70 % 59 182 222
50 % 360 531 34
40 % 360 531 42
30 % 360 531 44
Entity #37 | Chains: O
30S ribosomal protein S10 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 181 146
95 % 57 182 186
90 % 61 186 190
70 % 61 186 211
50 % 358 538 29
40 % 358 538 39
30 % 369 575 32
Entity #38 | Chains: P
30S ribosomal protein S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 178 155
95 % 55 178 203
90 % 55 178 211
70 % 55 178 234
50 % 356 536 32
40 % 356 536 41
30 % 356 536 43
Entity #39 | Chains: Q
30S ribosomal protein S12 protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 154 181
95 % 54 180 195
90 % 54 180 206
70 % 357 540 17
50 % 359 558 24
40 % 359 558 30
30 % 359 558 35
Entity #4 | Chains: e
50S ribosomal protein L5 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 193 131
95 % 60 193 168
90 % 60 193 181
70 % 60 193 205
50 % 284 460 53
40 % 284 460 64
30 % 284 460 64
Entity #40 | Chains: R
30S ribosomal protein S13 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 182 153
95 % 58 182 198
90 % 58 182 207
70 % 62 186 218
50 % 361 542 30
40 % 363 545 37
30 % 363 545 40
Entity #41 | Chains: S
30S ribosomal protein S14 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 146 183
95 % 55 175 210
90 % 55 175 220
70 % 55 175 242
50 % 59 181 238
40 % 59 187 241
30 % 59 188 251
Entity #42 | Chains: T
30S ribosomal protein S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 148 189
95 % 56 181 189
90 % 56 181 200
70 % 56 181 227
50 % 368 554 25
40 % 368 554 32
30 % 368 554 36
Entity #43 | Chains: U
30S ribosomal protein S16 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 180 157
95 % 58 180 205
90 % 58 180 217
70 % 58 180 238
50 % 62 184 239
40 % 62 184 251
30 % 62 184 273
Entity #44 | Chains: V
30S ribosomal protein S17 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 179 152
95 % 55 179 197
90 % 55 179 208
70 % 59 183 219
50 % 59 183 234
40 % 59 183 248
30 % 59 183 266
Entity #45 | Chains: W
30S ribosomal protein S18 protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 125 231
95 % 31 129 295
90 % 31 129 305
70 % 33 131 348
50 % 33 131 409
40 % 33 131 432
30 % 33 131 450
Entity #46 | Chains: X
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 176 159
95 % 55 176 207
90 % 55 176 218
70 % 59 182 224
50 % 358 543 28
40 % 358 543 36
30 % 358 543 39
Entity #47 | Chains: Y
30S ribosomal protein S20 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 178 156
95 % 55 178 202
90 % 55 178 213
70 % 55 178 237
50 % 59 182 237
40 % 61 206 223
30 % 61 206 236
Entity #48 | Chains: Z
30S ribosomal protein S21 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 124 235
95 % 31 124 309
90 % 31 124 321
70 % 33 126 359
50 % 33 126 423
40 % 33 126 447
30 % 33 126 464
Entity #49 | Chains: a
50S ribosomal protein L1 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 57 839
95 % 2 57 1130
90 % 2 57 1157
70 % 2 57 1187
50 % 88 164 288
40 % 88 164 301
30 % 88 164 328
Entity #5 | Chains: f
50S ribosomal protein L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 188 135
95 % 57 188 176
90 % 57 188 187
70 % 57 188 208
50 % 78 234 187
40 % 280 466 60
30 % 280 466 59
Entity #50 | Chains: 3
16S ribosomal RNA rna, length: 1539 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #51 | Chains: 1
23S ribosomal RNA rna, length: 2903 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #52 | Chains: 2
5S ribosomal RNA rna, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #53 | Chains: 5
tRNAfMet rna, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #54 | Chains: 4
mRNA rna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #55 | Chains: 8
Peptide chain release factor 2 protein, length: 371 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 54821
95 % 8 21 3376
90 % 8 21 3435
70 % 8 21 3446
50 % 8 21 3416
40 % 9 22 3276
30 % 18 37 1464
Entity #6 | Chains: g
50S ribosomal protein L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 171 164
95 % 53 172 218
90 % 53 172 229
70 % 53 172 254
50 % 54 173 279
40 % 221 351 99
30 % 221 364 94
Entity #7 | Chains: j
50S ribosomal protein L13 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 190 126
95 % 57 190 164
90 % 57 190 177
70 % 61 194 191
50 % 75 236 186
40 % 257 438 73
30 % 257 438 74
Entity #8 | Chains: k
50S ribosomal protein L14 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 191 124
95 % 57 191 161
90 % 57 191 175
70 % 61 195 188
50 % 284 478 46
40 % 284 478 52
30 % 284 478 52
Entity #9 | Chains: l
50S ribosomal protein L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 190 127
95 % 57 190 165
90 % 57 190 179
70 % 57 190 201
50 % 61 194 222
40 % 279 460 65
30 % 279 460 65

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures